AT1G03490.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120349001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G42725.1 | 0.895741 | unknown protein | - | - | - | - |
| AT3G52540.1 | 0.842934 | OFP18 (OVATE FAMILY PROTEIN 18) | OMAT3P112340 | - | - | - |
| AT1G19330.1 | 0.841978 | unknown protein | OMAT1P106200 | - | - | - |
| AT3G03770.1 | 0.802478 | leucine-rich repeat transmembrane protein kinase, putative | OMAT3P101150 | - | - | - |
| AT1G04425.1 | 0.791837 | other RNA | - | - | - | - |
| AT2G32990.1 | 0.791812 | AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8) | OMAT2P008070 | - | - | - |
| AT2G30200.1 | 0.787389 | [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase | OMAT2P106220 | - | - | - |
| AT3G10010.1 | 0.781618 | DML2 (DEMETER-LIKE 2) | OMAT3P103210,OMAT3P103220 | [OMAT3P103210]-, [OMAT3P103220]- | - | - |
| AT4G24790.1 | 0.77497 | ATP binding / DNA binding / DNA-directed DNA polymerase | - | - | - | - |
| AT2G35840.1 | 0.76701 | sucrose-phosphatase 1 (SPP1) | OMAT2P009070 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G64260.1 | -0.734628 | EXL2 (EXORDIUM LIKE 2) | OMAT5P019740 | - | OMAT5P117540 | - |
| AT1G73880.1 | -0.729348 | UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1) | OMAT1P021430 | - | - | - |
| AT4G31690.1 | -0.728262 | transcriptional factor B3 family protein | - | - | - | - |
| AT3G33058.1 | -0.727018 | transposable element gene | - | - | - | - |
| AT5G15820.1 | -0.724456 | zinc finger (C3HC4-type RING finger) family protein | OMAT5P005430 | - | - | - |
| AT3G15060.1 | -0.718554 | AtRABA1g (Arabidopsis Rab GTPase homolog A1g) | OMAT3P005440 | - | - | - |
| AT1G11400.1 | -0.717392 | PYM (Partner of Y14-Mago) | OMAT1P003890 | - | - | - |
| AT1G56470.1 | -0.701422 | pseudogene, disease resistance protein (fragment), blastp match of 58% identity and 1.1e-16 P-value to GP|15787901|gb|AAL07542.1||AF316412 resistance gene analog NBS7 {Helianthus annuus} | - | - | - | - |
| AT3G30640.1 | -0.701384 | transposable element gene | - | - | - | - |
| AT2G10310.1 | -0.697274 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0034637 | cellular carbohydrate biosynthetic process | 10/200 | 7.66 | 9.36e-08 | - | no |
| B | 4 | GO:0016051 | carbohydrate biosynthetic process | 11/200 | 6.58 | 1.39e-07 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 13/200 | 4.21 | 3.20e-06 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 16/200 | 3.52 | 3.65e-06 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 24/200 | 2.67 | 3.96e-06 | - | no |
| B | 5 | GO:0016053 | organic acid biosynthetic process | 10/200 | 4.62 | 1.29e-05 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 16/200 | 3.07 | 2.15e-05 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 13/200 | 2.95 | 1.52e-04 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 13/200 | 2.94 | 1.57e-04 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 13/200 | 2.90 | 1.85e-04 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 11/200 | 2.53 | 1.53e-03 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 44/200 | 1.51 | 1.69e-03 | - | yes |
| B | 4 | GO:0044249 | cellular biosynthetic process | 42/200 | 1.49 | 2.71e-03 | - | yes |
| C | 3 | GO:0044464 | cell part | 125/200 | 1.37 | 6.47e-07 | - | no |
| C | 5 | GO:0009532 | plastid stroma | 12/200 | 4.85 | 1.43e-06 | - | no |
| C | 5 | GO:0044434 | chloroplast part | 16/200 | 2.89 | 4.63e-05 | - | no |
| C | 4 | GO:0044435 | plastid part | 16/200 | 2.81 | 6.43e-05 | - | no |
| C | 5 | GO:0009536 | plastid | 33/200 | 1.79 | 3.70e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 54/200 | 1.44 | 1.49e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 36/200 | 1.48 | 5.92e-03 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 48/200 | 1.38 | 6.50e-03 | - | no |
| M | 3 | GO:0016740 | transferase activity | 36/200 | 2.20 | 2.24e-06 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 14/200 | 2.36 | 1.00e-03 | - | no |
| PS | 3 | PO:0006001 | phyllome | 133/200 | 1.30 | 4.58e-06 | - | no |
| PS | 4 | PO:0009025 | leaf | 122/200 | 1.33 | 6.99e-06 | - | no |
| PS | 3 | PO:0009006 | shoot | 138/200 | 1.27 | 7.52e-06 | - | no |
| PS | 4 | PO:0009001 | fruit | 128/200 | 1.30 | 8.46e-06 | - | no |
| PS | 3 | PO:0006342 | infructescence | 128/200 | 1.30 | 8.46e-06 | - | no |
| PS | 4 | PO:0009009 | embryo | 126/200 | 1.30 | 1.04e-05 | - | no |
| PS | 5 | PO:0008037 | seedling | 117/200 | 1.33 | 1.61e-05 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 133/200 | 1.27 | 1.74e-05 | - | no |
| PS | 3 | PO:0009010 | seed | 126/200 | 1.29 | 2.20e-05 | - | no |
| PS | 5 | PO:0009046 | flower | 132/200 | 1.27 | 2.24e-05 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 27/200 | 2.26 | 2.36e-05 | - | no |
| PS | 4 | PO:0005679 | epidermis | 27/200 | 2.18 | 4.59e-05 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 27/200 | 2.18 | 4.63e-05 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 113/200 | 1.31 | 4.65e-05 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 25/200 | 2.25 | 5.09e-05 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 25/200 | 2.23 | 5.71e-05 | - | no |
| PS | 3 | PO:0009031 | sepal | 119/200 | 1.29 | 5.77e-05 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 25/200 | 2.22 | 6.40e-05 | - | no |
| PS | 4 | PO:0004011 | initial cell | 25/200 | 2.20 | 7.11e-05 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 25/200 | 2.20 | 7.29e-05 | - | no |
| PS | 5 | PO:0020038 | petiole | 102/200 | 1.34 | 7.30e-05 | - | no |
| PS | 4 | PO:0000293 | guard cell | 24/200 | 2.23 | 7.93e-05 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 24/200 | 2.22 | 8.51e-05 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 24/200 | 2.22 | 8.73e-05 | - | no |
| PS | 3 | PO:0009013 | meristem | 106/200 | 1.32 | 9.10e-05 | 3.00E-06 | no |
| PS | 5 | PO:0008034 | leaf whorl | 120/200 | 1.27 | 9.80e-05 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 120/200 | 1.27 | 9.80e-05 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 108/200 | 1.31 | 9.85e-05 | - | no |
| PS | 3 | PO:0009032 | petal | 113/200 | 1.29 | 1.18e-04 | - | no |
| PS | 3 | PO:0009005 | root | 115/200 | 1.28 | 1.44e-04 | - | no |
| PS | 5 | PO:0009052 | pedicel | 104/200 | 1.28 | 4.54e-04 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 100/200 | 1.29 | 5.18e-04 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 98/200 | 1.27 | 1.10e-03 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 104/200 | 1.24 | 1.69e-03 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 110/200 | 1.22 | 1.80e-03 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 120/200 | 1.33 | 9.62e-06 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 127/200 | 1.29 | 2.03e-05 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 109/200 | 1.33 | 4.44e-05 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 117/200 | 1.30 | 4.79e-05 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 106/200 | 1.33 | 5.67e-05 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 108/200 | 1.31 | 9.55e-05 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 127/200 | 1.25 | 1.27e-04 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 108/200 | 1.30 | 1.37e-04 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 101/200 | 1.31 | 2.01e-04 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 101/200 | 1.31 | 2.06e-04 | - | no |
| PG | 5 | PO:0007133 | leaf production | 108/200 | 1.28 | 2.54e-04 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 108/200 | 1.28 | 2.57e-04 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 128/200 | 1.22 | 3.37e-04 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 108/200 | 1.27 | 3.50e-04 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 118/200 | 1.22 | 1.11e-03 | - | no |
| KW | 0 | biosynthetic | - | 29/200 | 4.06 | 3.28e-11 | - | no |
| KW | 0 | process | - | 46/200 | 2.25 | 4.30e-08 | - | no |
| KW | 0 | stroma | - | 12/200 | 6.44 | 5.81e-08 | - | no |
| KW | 0 | lyase | - | 11/200 | 5.54 | 8.64e-07 | - | no |
| KW | 0 | metabolic | - | 28/200 | 2.44 | 4.21e-06 | - | no |
| KW | 0 | catalytic | - | 23/200 | 2.26 | 8.70e-05 | - | no |
| KW | 0 | glycosyl | - | 13/200 | 3.05 | 1.09e-04 | - | no |
| KW | 0 | synthase | - | 13/200 | 2.96 | 1.48e-04 | - | no |
| KW | 0 | chloroplast | - | 33/200 | 1.87 | 1.62e-04 | - | no |
| KW | 0 | hydrolase | - | 17/200 | 2.33 | 4.14e-04 | - | no |
| KW | 0 | lipid | - | 10/200 | 2.91 | 7.32e-04 | - | no |
| KW | 0 | carrier | - | 11/200 | 2.74 | 7.70e-04 | - | no |
| KW | 0 | system | - | 38/200 | 1.57 | 1.77e-03 | - | no |
| KW | 0 | endomembrane | - | 37/200 | 1.57 | 2.10e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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