AT1G03495.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120349501000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G54060.1 | 0.96448 | UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) | OMAT5P114000 | - | - | - |
| AT3G29590.1 | 0.963602 | AT5MAT | OMAT3P109600 | - | - | - |
| AT5G65015.1 | 0.949628 | pre-tRNA | - | - | - | - |
| AT5G16080.1 | 0.949318 | AtCXE17 (Arabidopsis thaliana carboxyesterase 17) | OMAT5P104580 | - | - | - |
| AT5G59050.1 | 0.943166 | unknown protein | OMAT5P115700,OMAT5P115710 | [OMAT5P115700]-, [OMAT5P115710]- | - | - |
| AT2G39820.1 | 0.942845 | eukaryotic translation initiation factor 6, putative / eIF-6, putative | OMAT2P010540 | - | - | - |
| AT3G30530.1 | 0.942602 | ATBZIP42 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42) | OMAT3P011135 | - | - | - |
| AT4G33040.1 | 0.935742 | glutaredoxin family protein | OMAT4P109460 | - | - | - |
| AT4G14090.1 | 0.93036 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | OMAT4P103130 | - | - | - |
| AT1G50950.1 | 0.911939 | thioredoxin-related | OMAT1P014040 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G50190.1 | -0.698657 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| ath-MIR832 | -0.679832 | ath-MIR832 | - | - | - | - |
| AT4G10345.1 | -0.679832 | MIR832a | - | - | - | - |
| AT4G37230.1 | -0.674576 | oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative | - | - | - | - |
| AT4G26030.1 | -0.649506 | transcription factor | - | - | - | - |
| AT4G09452.1 | -0.625219 | Pseudogene of AT2G38590 | - | - | - | - |
| AT3G31935.1 | -0.623617 | transposable element gene | - | - | - | - |
| AT1G69828.1 | -0.616877 | Encodes a defensin-like (DEFL) family protein. | - | - | - | - |
| AT3G06870.1 | -0.614986 | proline-rich family protein | - | - | OMAT3P002480 | - |
| AT3G61970.1 | -0.608042 | NGA2 (NGATHA2) | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 8.13e-08 | :20 terms with high significance | |
| 8.13e-08 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0050789 | regulation of biological process | 47/200 | 2.72 | 5.81e-11 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 42/200 | 2.75 | 4.58e-10 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 34/200 | 3.19 | 5.11e-10 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 34/200 | 3.11 | 1.03e-09 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 35/200 | 2.97 | 1.89e-09 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 30/200 | 3.05 | 1.53e-08 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 30/200 | 2.99 | 2.39e-08 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 30/200 | 2.99 | 2.39e-08 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 30/200 | 2.96 | 2.88e-08 | - | no |
| B | 5 | GO:0006350 | transcription | 30/200 | 2.94 | 3.43e-08 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 30/200 | 2.85 | 6.92e-08 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 29/200 | 2.89 | 8.13e-08 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 30/200 | 2.77 | 1.24e-07 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 18/200 | 3.44 | 1.47e-06 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 34/200 | 2.26 | 2.33e-06 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 18/200 | 3.29 | 2.92e-06 | - | no |
| B | 4 | GO:0010467 | gene expression | 41/200 | 2.01 | 4.30e-06 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 22/200 | 2.59 | 1.56e-05 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 13/200 | 3.48 | 2.66e-05 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 34/200 | 2.01 | 2.84e-05 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/200 | 1.86 | 6.90e-05 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 39/200 | 1.81 | 8.73e-05 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 39/200 | 1.80 | 9.33e-05 | - | no |
| B | 3 | GO:0006810 | transport | 22/200 | 2.15 | 2.57e-04 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 22/200 | 2.14 | 2.68e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 34/200 | 1.75 | 4.59e-04 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 55/200 | 1.42 | 1.90e-03 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 51/200 | 1.45 | 1.90e-03 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 42/200 | 1.49 | 2.71e-03 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 42/200 | 1.44 | 5.08e-03 | - | no |
| C | 5 | GO:0005634 | nucleus | 28/200 | 1.79 | 9.33e-04 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 22/200 | 1.78 | 3.19e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 110/200 | 1.20 | 3.47e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 34/200 | 3.37 | 1.21e-10 | - | no |
| M | 4 | GO:0003677 | DNA binding | 36/200 | 2.60 | 3.82e-08 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 50/200 | 2.11 | 7.86e-08 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 14/200 | 3.18 | 4.16e-05 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 16/200 | 2.85 | 5.50e-05 | - | no |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 15/200 | 2.90 | 7.00e-05 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 121/200 | 1.56 | 1.80e-10 | - | no |
| PS | 3 | PO:0009013 | meristem | 121/200 | 1.51 | 2.07e-09 | - | no |
| PS | 3 | PO:0009006 | shoot | 144/200 | 1.33 | 8.67e-08 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 137/200 | 1.31 | 1.13e-06 | - | no |
| PS | 5 | PO:0009046 | flower | 135/200 | 1.30 | 3.08e-06 | - | no |
| PS | 4 | PO:0009047 | stem | 112/200 | 1.33 | 3.04e-05 | - | no |
| PS | 3 | PO:0009010 | seed | 125/200 | 1.28 | 4.05e-05 | - | no |
| PS | 4 | PO:0009001 | fruit | 125/200 | 1.27 | 5.47e-05 | - | no |
| PS | 3 | PO:0006342 | infructescence | 125/200 | 1.27 | 5.47e-05 | - | no |
| PS | 4 | PO:0009009 | embryo | 123/200 | 1.27 | 6.55e-05 | - | no |
| PS | 3 | PO:0000034 | vascular system | 11/200 | 3.37 | 1.21e-04 | - | no |
| PS | 3 | PO:0006001 | phyllome | 126/200 | 1.23 | 3.15e-04 | - | no |
| PS | 5 | PO:0008037 | seedling | 111/200 | 1.26 | 4.78e-04 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 113/200 | 1.20 | 3.21e-03 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 113/200 | 1.20 | 3.21e-03 | - | no |
| PS | 4 | PO:0009025 | leaf | 110/200 | 1.20 | 4.23e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 102/200 | 1.19 | 9.49e-03 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 133/200 | 1.27 | 1.82e-05 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 129/200 | 1.27 | 3.95e-05 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 125/200 | 1.27 | 6.80e-05 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 118/200 | 1.22 | 1.11e-03 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 109/200 | 1.21 | 2.86e-03 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 109/200 | 1.21 | 3.39e-03 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 100/200 | 1.20 | 6.17e-03 | - | no |
| KW | 0 | inflorescence | - | 12/200 | 10.45 | 1.70e-10 | - | no |
| KW | 0 | transcription | - | 39/200 | 2.69 | 4.07e-09 | - | no |
| KW | 0 | factor | - | 41/200 | 2.34 | 8.01e-08 | - | no |
| KW | 0 | meristem | - | 13/200 | 5.67 | 9.12e-08 | - | no |
| KW | 0 | regulation | - | 34/200 | 2.57 | 1.18e-07 | - | no |
| KW | 0 | transporter | - | 22/200 | 3.16 | 5.61e-07 | - | no |
| KW | 0 | homeodomain | - | 12/200 | 4.76 | 1.77e-06 | - | no |
| KW | 0 | stage | - | 40/200 | 2.07 | 3.01e-06 | - | no |
| KW | 0 | ipr009057 | - | 11/200 | 4.78 | 4.03e-06 | - | no |
| KW | 0 | bilateral | - | 14/200 | 3.84 | 4.61e-06 | - | no |
| KW | 0 | petal | - | 31/200 | 2.12 | 2.25e-05 | - | no |
| KW | 0 | dependent | - | 29/200 | 2.17 | 2.84e-05 | - | no |
| KW | 0 | superfamily | - | 13/200 | 3.43 | 3.11e-05 | - | no |
| KW | 0 | transmembrane | - | 19/200 | 2.62 | 4.47e-05 | - | no |
| KW | 0 | differentiation | - | 31/200 | 2.05 | 4.48e-05 | - | no |
| KW | 0 | expansion | - | 30/200 | 2.04 | 6.40e-05 | - | no |
| KW | 0 | cotyledon | - | 15/200 | 2.85 | 8.67e-05 | - | no |
| KW | 0 | nucleus | - | 27/200 | 2.09 | 9.28e-05 | - | no |
| KW | 0 | expression | - | 14/200 | 2.90 | 1.16e-04 | - | no |
| KW | 0 | expanded | - | 13/200 | 2.98 | 1.40e-04 | - | no |
| KW | 0 | nuclear | - | 10/200 | 3.25 | 2.91e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | - | no |
| KW | 0 | conserved | - | 26/200 | 1.92 | 4.79e-04 | 4.00E-09 | no |
| KW | 0 | leaves | - | 12/200 | 2.42 | 1.52e-03 | - | no |
| KW | 0 | function | - | 27/200 | 1.73 | 1.85e-03 | - | no |
| KW | 0 | transport | - | 19/200 | 1.95 | 1.89e-03 | - | no |
| KW | 0 | plasma | - | 21/200 | 1.83 | 2.63e-03 | - | no |
| KW | 0 | amino | - | 17/200 | 1.97 | 2.66e-03 | - | yes |
| KW | 0 | anthesis | - | 23/200 | 1.75 | 3.20e-03 | - | no |
| KW | 0 | mature | - | 17/200 | 1.90 | 3.94e-03 | - | no |
| KW | 0 | member | - | 19/200 | 1.73 | 7.04e-03 | - | no |
| KW | 0 | related | - | 40/200 | 1.42 | 7.66e-03 | - | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | - | no |
| KW | 0 | receptor | - | 10/200 | 2.10 | 8.73e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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