AT1G04860.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120486001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G29276.1 | 0.867877 | Pseudogene of AT4G29270 | - | - | - | - |
| AT1G80410.1 | 0.83041 | EMB2753 (EMBRYO DEFECTIVE 2753) | OMAT1P121340 | - | - | - |
| AT1G26270.1 | 0.821988 | phosphatidylinositol 3- and 4-kinase family protein | OMAT1P108200 | - | OMAT1P009350 | - |
| AT1G09570.1 | 0.816998 | PHYA (PHYTOCHROME A) | OMAT1P102970 | - | OMAT1P003290 | - |
| AT5G06110.1 | 0.810781 | DNAJ heat shock N-terminal domain-containing protein / cell division protein-related | OMAT5P101600 | - | - | - |
| AT3G04580.1 | 0.810531 | EIN4 (ETHYLENE INSENSITIVE 4) | OMAT3P101450 | - | - | - |
| AT4G18400.1 | 0.789101 | unknown protein | - | - | - | - |
| AT1G22530.1 | 0.788031 | PATL2 (PATELLIN 2) | OMAT1P107250 | - | - | - |
| AT5G20600.1 | 0.787227 | FUNCTIONS IN: molecular_function unknown | OMAT5P106110 | - | - | - |
| AT1G38176.1 | 0.781282 | transposable element gene | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G20110.2 | -0.780169 | tesmin/TSO1-like CXC domain-containing protein | - | - | - | - |
| AT2G26950.1 | -0.765845 | AtMYB104 (myb domain protein 104) | - | - | - | - |
| AT4G15870.1 | -0.752707 | ATTS1 | - | - | - | - |
| AT1G61350.1 | -0.751915 | armadillo/beta-catenin repeat family protein | OMAT1P016690 | - | - | - |
| AT5G36200.1 | -0.728854 | F-box family protein | - | - | - | - |
| AT1G69590.1 | -0.726929 | pseudogene, similar to SAE1-S9-protein, blastp match of 31% identity and 1.7e-11 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa} | - | - | - | - |
| AT1G10538.1 | -0.725877 | pseudogene of CPL4 (phosphoprotein phosphatase) | - | - | - | - |
| AT3G45490.1 | -0.718442 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G45520.1 | -0.713582 | unknown protein | - | - | - | - |
| AT4G07931.1 | -0.712362 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 7.93e-13 | :20 terms with high significance | |
| 7.93e-13 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0010035 | response to inorganic substance | 10/200 | 3.51 | 1.53e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 67/200 | 1.79 | 1.98e-07 | - | yes |
| C | 3 | GO:0005622 | intracellular | 82/200 | 1.54 | 3.38e-06 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 79/200 | 1.55 | 4.53e-06 | - | yes |
| C | 5 | GO:0005739 | mitochondrion | 19/200 | 2.97 | 7.44e-06 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 59/200 | 1.70 | 7.55e-06 | - | yes |
| C | 3 | GO:0016020 | membrane | 47/200 | 1.72 | 6.00e-05 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 66/200 | 1.50 | 1.12e-04 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 66/200 | 1.50 | 1.12e-04 | - | yes |
| C | 4 | GO:0005618 | cell wall | 11/200 | 3.31 | 1.41e-04 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 11/200 | 3.29 | 1.51e-04 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 68/200 | 1.47 | 1.59e-04 | - | yes |
| C | 3 | GO:0044464 | cell part | 115/200 | 1.26 | 3.24e-04 | - | yes |
| C | 3 | GO:0043234 | protein complex | 14/200 | 2.14 | 2.55e-03 | - | yes |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| C | 5 | GO:0009536 | plastid | 30/200 | 1.62 | 2.97e-03 | 3.64E-21 | yes |
| C | 4 | GO:0005886 | plasma membrane | 21/200 | 1.70 | 6.53e-03 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 23/200 | 1.60 | 9.19e-03 | - | no |
| C | 3 | GO:0044422 | organelle part | 23/200 | 1.60 | 9.27e-03 | - | no |
| PS | 3 | PO:0009005 | root | 145/200 | 1.61 | 7.59e-16 | - | yes |
| PS | 5 | PO:0020038 | petiole | 131/200 | 1.72 | 1.01e-15 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 137/200 | 1.66 | 1.62e-15 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 127/200 | 1.73 | 3.95e-15 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 130/200 | 1.68 | 1.19e-14 | - | yes |
| PS | 5 | PO:0008037 | seedling | 140/200 | 1.59 | 3.73e-14 | - | yes |
| PS | 4 | PO:0009047 | stem | 135/200 | 1.60 | 1.34e-13 | - | yes |
| PS | 4 | PO:0009025 | leaf | 141/200 | 1.53 | 6.08e-13 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 133/200 | 1.59 | 6.60e-13 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 133/200 | 1.58 | 7.35e-13 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 135/200 | 1.57 | 7.93e-13 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 126/200 | 1.62 | 1.41e-12 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 129/200 | 1.59 | 2.89e-12 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 137/200 | 1.52 | 5.54e-12 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 141/200 | 1.50 | 6.33e-12 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 141/200 | 1.50 | 6.33e-12 | - | yes |
| PS | 3 | PO:0009031 | sepal | 138/200 | 1.49 | 2.02e-11 | - | yes |
| PS | 3 | PO:0009013 | meristem | 126/200 | 1.57 | 2.13e-11 | - | yes |
| PS | 4 | PO:0009009 | embryo | 142/200 | 1.47 | 2.13e-11 | - | yes |
| PS | 3 | PO:0009010 | seed | 142/200 | 1.45 | 6.59e-11 | - | yes |
| PS | 3 | PO:0009032 | petal | 132/200 | 1.51 | 7.71e-11 | - | yes |
| PS | 4 | PO:0009001 | fruit | 142/200 | 1.44 | 1.05e-10 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 142/200 | 1.44 | 1.05e-10 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 35/200 | 3.25 | 1.67e-10 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 35/200 | 3.24 | 1.88e-10 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 35/200 | 3.23 | 1.97e-10 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 35/200 | 3.15 | 4.09e-10 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 35/200 | 3.13 | 4.94e-10 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 35/200 | 3.10 | 5.96e-10 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 125/200 | 1.51 | 6.27e-10 | - | yes |
| PS | 4 | PO:0004011 | initial cell | 35/200 | 3.08 | 7.07e-10 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 35/200 | 3.08 | 7.38e-10 | - | no |
| PS | 3 | PO:0006001 | phyllome | 143/200 | 1.39 | 1.66e-09 | - | yes |
| PS | 4 | PO:0005679 | epidermis | 36/200 | 2.91 | 2.01e-09 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 36/200 | 2.91 | 2.04e-09 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 35/200 | 2.93 | 2.64e-09 | - | no |
| PS | 5 | PO:0009046 | flower | 142/200 | 1.36 | 1.37e-08 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 142/200 | 1.36 | 2.24e-08 | - | yes |
| PS | 3 | PO:0009006 | shoot | 143/200 | 1.32 | 1.94e-07 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 44/200 | 1.51 | 1.70e-03 | - | no |
| PG | 5 | PO:0007133 | leaf production | 138/200 | 1.64 | 3.57e-15 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 138/200 | 1.64 | 3.65e-15 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 138/200 | 1.63 | 7.02e-15 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 129/200 | 1.68 | 2.58e-14 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 128/200 | 1.66 | 7.33e-14 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 134/200 | 1.61 | 9.12e-14 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 140/200 | 1.55 | 2.50e-13 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 132/200 | 1.61 | 2.81e-13 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 140/200 | 1.55 | 3.75e-13 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 128/200 | 1.61 | 1.28e-12 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 130/200 | 1.58 | 3.12e-12 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 140/200 | 1.44 | 2.06e-10 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 144/200 | 1.41 | 3.70e-10 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 140/200 | 1.42 | 9.65e-10 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 145/200 | 1.38 | 1.71e-09 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 42/200 | 1.43 | 5.61e-03 | - | no |
| KW | 0 | response | - | 37/200 | 2.06 | 7.42e-06 | - | no |
| KW | 0 | mitochondrion | - | 17/200 | 3.10 | 1.14e-05 | - | no |
| KW | 0 | nucleic | - | 18/200 | 2.75 | 3.43e-05 | - | no |
| KW | 0 | subunit | - | 18/200 | 2.46 | 1.54e-04 | - | no |
| KW | 0 | cytoplasm | - | 10/200 | 3.23 | 3.11e-04 | - | no |
| KW | 0 | terminal | - | 33/200 | 1.71 | 7.91e-04 | 1.00E-44 | yes |
| KW | 0 | stress | - | 11/200 | 2.34 | 2.84e-03 | - | no |
| KW | 0 | membrane | - | 40/200 | 1.50 | 3.00e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 3.05E-16 | yes |
| KW | 0 | complex | - | 16/200 | 1.89 | 5.17e-03 | - | yes |
| KW | 0 | plasma | - | 20/200 | 1.74 | 5.56e-03 | - | no |
| KW | 0 | alpha | - | 14/200 | 1.92 | 6.85e-03 | 2.00E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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