Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G53780.1	0.941396	ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase	OMAT1P113285	-	-	-
AT4G24690.1	0.918651	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	OMAT4P007700	-	-	-
AT1G11930.1	0.914381	alanine racemase family protein	OMAT1P004130	-	-	-
AT3G27260.1	0.909927	GTE8	OMAT3P010240	-	OMAT3P108980	-
AT5G43930.1	0.900302	transducin family protein / WD-40 repeat family protein	OMAT5P012150	-	-	-
AT5G63640.1	0.896325	VHS domain-containing protein / GAT domain-containing protein	OMAT5P019500	-	-	-
AT3G19420.1	0.888842	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	OMAT3P007320	-	-	-
AT1G17680.1	0.88372	transcription factor-related	OMAT1P006540	-	-	-
AT4G13530.1	0.882751	unknown protein	OMAT4P003570	-	OMAT4P102960,OMAT4P102970	[OMAT4P102960]-, [OMAT4P102970]-
AT3G21295.1	0.882477	FUNCTIONS IN: molecular_function unknown	OMAT3P008110	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G67785.1	-0.885778	unknown protein	-	-	-	-
AT3G53900.2	-0.847226	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	OMAT3P112860	-	-	-
AT5G17870.1	-0.83707	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	OMAT5P006170	-	-	-
AT1G50575.1	-0.834272	lysine decarboxylase family protein	-	-	-	-
AT5G63310.1	-0.819766	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	OMAT5P117150	-	-	-
AT1G35680.1	-0.818556	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	OMAT1P012280	-	-	-
AT2G30695.1	-0.813757	FUNCTIONS IN: molecular_function unknown	-	-	-	-
AT3G07568.1	-0.810792	unknown protein	-	-	-	-
AT2G37660.1	-0.807525	binding / catalytic/ coenzyme binding	OMAT2P108870	-	-	-
AT2G02500.1	-0.80451	ISPD	OMAT2P100520	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 9.12e-21	:20 terms with high significance
9.12e-21 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	3	GO:0051649	establishment of localization in cell	10/200	3.71	9.34e-05	-	no
B	3	GO:0051641	cellular localization	10/200	3.40	2.00e-04	-	no
B	5	GO:0006464	protein modification process	22/200	2.11	3.21e-04	-	no
B	4	GO:0043412	macromolecule modification	22/200	1.94	1.03e-03	-	no

C	4	GO:0005886	plasma membrane	25/200	2.02	2.85e-04	-	no

PS	4	PO:0000230	inflorescence meristem	156/200	2.01	1.99e-30	-	yes
PS	3	PO:0009013	meristem	157/200	1.95	2.85e-29	-	yes
PS	3	PO:0020091	male gametophyte	156/200	1.88	9.31e-27	-	yes
PS	4	PO:0009047	stem	157/200	1.86	1.61e-26	-	yes
PS	5	PO:0000013	cauline leaf	149/200	1.93	1.09e-25	-	yes
PS	4	PO:0020030	cotyledon	145/200	1.97	1.41e-25	-	yes
PS	5	PO:0009028	microsporophyll	154/200	1.84	9.40e-25	-	yes
PS	5	PO:0009027	megasporophyll	152/200	1.81	2.38e-23	-	yes
PS	5	PO:0009052	pedicel	147/200	1.81	8.81e-22	-	yes
PS	3	PO:0009005	root	155/200	1.72	1.18e-21	-	yes
PS	4	PO:0009026	sporophyll	155/200	1.72	1.20e-21	-	yes
PS	5	PO:0008037	seedling	152/200	1.72	9.12e-21	-	yes
PS	3	PO:0009032	petal	151/200	1.72	1.64e-20	-	yes
PS	3	PO:0009031	sepal	155/200	1.68	2.73e-20	-	yes
PS	4	PO:0009025	leaf	154/200	1.67	6.60e-20	-	yes
PS	5	PO:0020039	leaf lamina	144/200	1.75	2.55e-19	-	yes
PS	5	PO:0008034	leaf whorl	154/200	1.63	1.26e-18	-	yes
PS	4	PO:0008033	phyllome whorl	154/200	1.63	1.26e-18	-	yes
PS	4	PO:0000037	shoot apex	146/200	1.70	1.88e-18	-	yes
PS	5	PO:0020038	petiole	135/200	1.77	8.06e-18	-	yes
PS	4	PO:0009009	embryo	154/200	1.59	2.08e-17	-	yes
PS	4	PO:0009001	fruit	155/200	1.58	4.23e-17	-	yes
PS	3	PO:0006342	infructescence	155/200	1.58	4.23e-17	-	yes
PS	3	PO:0009010	seed	154/200	1.57	8.56e-17	-	yes
PS	3	PO:0006001	phyllome	158/200	1.54	1.08e-16	-	yes
PS	4	PO:0006345	pollen tube	75/200	2.57	2.53e-16	-	yes
PS	5	PO:0009046	flower	158/200	1.52	5.75e-16	-	yes
PS	4	PO:0009049	inflorescence	158/200	1.51	1.15e-15	-	yes
PS	3	PO:0000084	sperm cell	78/200	2.40	2.43e-15	-	no
PS	3	PO:0020097	generative cell	78/200	2.40	2.43e-15	-	no
PS	3	PO:0009006	shoot	160/200	1.47	6.43e-15	-	yes

PG	4	PO:0001054	4 leaf senescence stage	146/200	1.90	6.55e-24	-	yes
PG	5	PO:0001185	C globular stage	151/200	1.84	6.90e-24	-	yes
PG	3	PO:0001050	leaf development stages	146/200	1.90	6.98e-24	-	yes
PG	5	PO:0007133	leaf production	150/200	1.78	5.82e-22	-	yes
PG	4	PO:0007112	1 main shoot growth	150/200	1.78	5.97e-22	-	yes
PG	3	PO:0007134	A vegetative growth	150/200	1.77	1.32e-21	-	yes
PG	5	PO:0001081	F mature embryo stage	144/200	1.81	5.30e-21	-	yes
PG	5	PO:0001078	E expanded cotyledon stage	147/200	1.77	9.09e-21	-	yes
PG	4	PO:0007631	embryo development stages	153/200	1.70	2.31e-20	-	yes
PG	3	PO:0001170	seed development stages	153/200	1.69	3.85e-20	-	yes
PG	5	PO:0004507	D bilateral stage	144/200	1.75	2.37e-19	-	yes
PG	4	PO:0007600	3 floral organ development stages	161/200	1.58	8.13e-19	-	yes
PG	4	PO:0007616	4 anthesis	156/200	1.61	2.17e-18	-	yes
PG	5	PO:0007604	corolla developmental stages	157/200	1.59	4.60e-18	-	yes
PG	3	PO:0007615	flower development stages	161/200	1.54	2.42e-17	-	yes
PG	5	PO:0007605	androecium developmental stages	76/200	2.60	9.14e-17	-	no

KW	0	cellular_component	-	78/200	1.60	1.48e-06	-	no
KW	0	ipr013083	-	13/200	4.15	3.74e-06	-	no
KW	0	finger	-	22/200	2.38	5.71e-05	-	no
KW	0	biological_process	-	84/200	1.41	9.93e-05	-	yes
KW	0	plasma	-	23/200	2.01	5.12e-04	-	no
KW	0	ubiquitin	-	12/200	2.67	6.36e-04	-	no
KW	0	motif	-	12/200	2.47	1.30e-03	-	no
KW	0	ligase	-	10/200	2.56	2.02e-03	-	no
KW	0	intracellular	-	12/200	2.33	2.19e-03	-	no
KW	0	amino	-	16/200	1.86	6.09e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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