ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

AT1G11070.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u121107001000i

AT1G11070.1(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT2G12475.10.976035Encodes a defensin-like (DEFL) family protein.----
AT4G08530.10.975464protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinOMAT4P002100---
AT3G24250.10.974794glycine-rich proteinOMAT3P009200---
AT3G04943.10.974665LCR41 (Low-molecular-weight cysteine-rich 41)----
AT2G33233.10.974646LCR49 (Low-molecular-weight cysteine-rich 49)OMAT2P107200---
AT2G32030.10.973633GCN5-related N-acetyltransferase (GNAT) family proteinOMAT2P106830---
AT5G19175.10.972558Encodes a defensin-like (DEFL) family protein.----
AT3G17155.10.970591Encodes a defensin-like (DEFL) family protein.----
AT3G50990.10.969537electron carrier/ heme binding / peroxidaseOMAT3P013570---
AT1G13607.10.967591Encodes a defensin-like (DEFL) family protein.OMAT1P004780---
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT3G13270.1-0.721871transposable element gene----
AT2G16200.1-0.696579protein binding / structural molecule----
AT3G33121.1-0.677801transposable element gene----
AT2G27050.1-0.668467EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)OMAT2P005910-OMAT2P105220-
AT5G27890.1-0.65706FUNCTIONS IN: molecular_function unknown----
AT3G33160.1-0.637805transposable element gene----
AT1G15590.1-0.634609FUNCTIONS IN: molecular_function unknown----
AT3G49230.1-0.630016unknown protein----
AT5G23040.1-0.624382CDF1 (CELL GROWTH DEFECT FACTOR 1)OMAT5P106710---
AT4G39756.1-0.609072kelch repeat-containing F-box family protein----

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
B5GO:0032774RNA biosynthetic process15/2002.741.38e-04-no
B3GO:0033036macromolecule localization11/2003.182.06e-04-no
B3GO:0006810transport22/2002.152.57e-04-no
B3GO:0051234establishment of localization22/2002.142.68e-04-no
B5GO:0051252regulation of RNA metabolic process14/2002.682.68e-04-no
B4GO:0080090regulation of primary metabolic process21/2001.999.09e-04-no
B5GO:0031326regulation of cellular biosynthetic process20/2001.991.18e-03-no
B4GO:0009889regulation of biosynthetic process20/2001.991.18e-03-no
B5GO:0006350transcription20/2001.961.44e-03-no
B5GO:0010556regulation of macromolecule biosynthetic process19/2001.932.18e-03-no
B3GO:0007275multicellular organismal development20/2001.882.32e-03-no
B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process19/2001.902.66e-03-no
B4GO:0031323regulation of cellular metabolic process20/2001.852.86e-03-no
B4GO:0051171regulation of nitrogen compound metabolic process19/2001.882.98e-03-no
B4GO:0060255regulation of macromolecule metabolic process20/2001.833.30e-03-no
B3GO:0019222regulation of metabolic process21/2001.783.63e-03-no
B5GO:0010468regulation of gene expression19/2001.785.23e-03-no
B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
C3GO:0012505endomembrane system69/2002.844.08e-17-no
C3GO:0044464cell part127/2001.391.46e-07-no
M3GO:0003700transcription factor activity20/2001.981.26e-03-no
KW0system-72/2002.975.00e-19-no
KW0endomembrane-70/2002.962.28e-18-no
KW0globular-24/2006.408.95e-14-no
KW0defensin-13/20010.016.35e-11-no
KW0transfer-10/2008.712.54e-08-no
KW0inhibitor-15/2005.026.64e-08-no
KW0differentiation-34/2002.252.67e-06-yes
KW0stage-40/2002.073.01e-06-yes
KW0development-20/2002.877.70e-06-no
KW0anthesis-29/2002.211.99e-05-yes
KW0similarity-10/2004.163.39e-05-no
KW0lipid-12/2003.494.69e-05-no
KW0petal-30/2002.065.58e-05-yes
KW0expansion-30/2002.046.40e-05-yes
KW0small-12/2002.982.28e-04-no
KW0transport-21/2002.163.18e-04-no
KW0glycosyl-12/2002.813.91e-04-no
KW0sequence-11/2002.894.81e-04-no
KW0protease-10/2002.995.89e-04-no
KW0embryo-16/2002.306.56e-04-no
KW0regulation-24/2001.821.65e-03-no
KW0flower-16/2002.091.82e-03-yes
KW0dependent-23/2001.724.06e-03-no
KW0encodes-38/2001.494.43e-03-no
KW0transporter-14/2002.014.46e-03-no
KW0conserved-22/2001.639.07e-032.00E-05no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

AT1G11070.1

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • without_OMAT_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.59701
description
http://purl.org/dc/elements/1.1/description
  • AT1G11070.1(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT2G12475.10.976035Encodes a defensin-like (DEFL) family protein.----
    AT4G08530.10.975464protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinOMAT4P002100---
    AT3G24250.10.974794glycine-rich proteinOMAT3P009200---
    AT3G04943.10.974665LCR41 (Low-molecular-weight cysteine-rich 41)----
    AT2G33233.10.974646LCR49 (Low-molecular-weight cysteine-rich 49)OMAT2P107200---
    AT2G32030.10.973633GCN5-related N-acetyltransferase (GNAT) family proteinOMAT2P106830---
    AT5G19175.10.972558Encodes a defensin-like (DEFL) family protein.----
    AT3G17155.10.970591Encodes a defensin-like (DEFL) family protein.----
    AT3G50990.10.969537electron carrier/ heme binding / peroxidaseOMAT3P013570---
    AT1G13607.10.967591Encodes a defensin-like (DEFL) family protein.OMAT1P004780---
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT3G13270.1-0.721871transposable element gene----
    AT2G16200.1-0.696579protein binding / structural molecule----
    AT3G33121.1-0.677801transposable element gene----
    AT2G27050.1-0.668467EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)OMAT2P005910-OMAT2P105220-
    AT5G27890.1-0.65706FUNCTIONS IN: molecular_function unknown----
    AT3G33160.1-0.637805transposable element gene----
    AT1G15590.1-0.634609FUNCTIONS IN: molecular_function unknown----
    AT3G49230.1-0.630016unknown protein----
    AT5G23040.1-0.624382CDF1 (CELL GROWTH DEFECT FACTOR 1)OMAT5P106710---
    AT4G39756.1-0.609072kelch repeat-containing F-box family protein----

    Get whole results

    Over-Representation Analysis Result

    p-value <= 1.00e-06:20 terms with high significance
    1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    B5GO:0032774RNA biosynthetic process15/2002.741.38e-04-no
    B3GO:0033036macromolecule localization11/2003.182.06e-04-no
    B3GO:0006810transport22/2002.152.57e-04-no
    B3GO:0051234establishment of localization22/2002.142.68e-04-no
    B5GO:0051252regulation of RNA metabolic process14/2002.682.68e-04-no
    B4GO:0080090regulation of primary metabolic process21/2001.999.09e-04-no
    B5GO:0031326regulation of cellular biosynthetic process20/2001.991.18e-03-no
    B4GO:0009889regulation of biosynthetic process20/2001.991.18e-03-no
    B5GO:0006350transcription20/2001.961.44e-03-no
    B5GO:0010556regulation of macromolecule biosynthetic process19/2001.932.18e-03-no
    B3GO:0007275multicellular organismal development20/2001.882.32e-03-no
    B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process19/2001.902.66e-03-no
    B4GO:0031323regulation of cellular metabolic process20/2001.852.86e-03-no
    B4GO:0051171regulation of nitrogen compound metabolic process19/2001.882.98e-03-no
    B4GO:0060255regulation of macromolecule metabolic process20/2001.833.30e-03-no
    B3GO:0019222regulation of metabolic process21/2001.783.63e-03-no
    B5GO:0010468regulation of gene expression19/2001.785.23e-03-no
    B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
    C3GO:0012505endomembrane system69/2002.844.08e-17-no
    C3GO:0044464cell part127/2001.391.46e-07-no
    M3GO:0003700transcription factor activity20/2001.981.26e-03-no
    KW0system-72/2002.975.00e-19-no
    KW0endomembrane-70/2002.962.28e-18-no
    KW0globular-24/2006.408.95e-14-no
    KW0defensin-13/20010.016.35e-11-no
    KW0transfer-10/2008.712.54e-08-no
    KW0inhibitor-15/2005.026.64e-08-no
    KW0differentiation-34/2002.252.67e-06-yes
    KW0stage-40/2002.073.01e-06-yes
    KW0development-20/2002.877.70e-06-no
    KW0anthesis-29/2002.211.99e-05-yes
    KW0similarity-10/2004.163.39e-05-no
    KW0lipid-12/2003.494.69e-05-no
    KW0petal-30/2002.065.58e-05-yes
    KW0expansion-30/2002.046.40e-05-yes
    KW0small-12/2002.982.28e-04-no
    KW0transport-21/2002.163.18e-04-no
    KW0glycosyl-12/2002.813.91e-04-no
    KW0sequence-11/2002.894.81e-04-no
    KW0protease-10/2002.995.89e-04-no
    KW0embryo-16/2002.306.56e-04-no
    KW0regulation-24/2001.821.65e-03-no
    KW0flower-16/2002.091.82e-03-yes
    KW0dependent-23/2001.724.06e-03-no
    KW0encodes-38/2001.494.43e-03-no
    KW0transporter-14/2002.014.46e-03-no
    KW0conserved-22/2001.639.07e-032.00E-05no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • AT1G11070.1
attributionURL
http://creativecommons.org/ns#attributionURL
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i