AT1G70450.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u127045001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G04360.1 | 0.75645 | zinc finger (C3HC4-type RING finger) family protein | - | - | - | - |
| AT5G09520.1 | 0.756249 | hydroxyproline-rich glycoprotein family protein | OMAT5P102560 | - | - | - |
| AT5G59300.1 | 0.751658 | UBC7 (UBIQUITIN CARRIER PROTEIN 7) | OMAT5P115820 | - | - | - |
| AT3G11200.1 | 0.746603 | AL2 (ALFIN-LIKE 2) | OMAT3P103680 | - | - | - |
| AT5G12420.1 | 0.745978 | unknown protein | OMAT5P103510 | - | - | - |
| AT1G74460.1 | 0.729823 | GDSL-motif lipase/hydrolase family protein | OMAT1P119110 | - | - | - |
| AT5G33315.1 | 0.718582 | transposable element gene | - | - | - | - |
| AT5G28230.1 | 0.716957 | pseudogene, similar to glucose-6-phosphate/phosphate-translocator precursor, contains similarity to glucose-6-phosphate/phosphate-translocator precursors | - | - | - | - |
| AT3G55573.1 | 0.716343 | unknown protein | - | - | - | - |
| AT4G17470.1 | 0.715555 | palmitoyl protein thioesterase family protein | OMAT4P104310 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G61825.1 | -0.774474 | pre-tRNA | - | - | - | - |
| AT4G04510.1 | -0.766581 | protein kinase family protein | - | - | - | - |
| AT5G29053.1 | -0.76226 | transposable element gene | - | - | - | - |
| AT1G48180.1 | -0.75673 | unknown protein | - | - | - | - |
| AT5G35334.1 | -0.728175 | transposable element gene | - | - | - | - |
| AT1G58300.1 | -0.723127 | ho4 (HEME OXYGENASE 4) | - | - | - | - |
| ath-MIR847 | -0.718564 | ath-MIR847 | - | - | - | - |
| AT1G07051.1 | -0.718564 | MIR847a | - | - | - | - |
| AT4G07031.1 | -0.717373 | transposable element gene | - | - | - | - |
| AT5G45576.1 | -0.710664 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006629 | lipid metabolic process | 14/200 | 3.22 | 3.56e-05 | - | no |
| B | 3 | GO:0006810 | transport | 20/200 | 1.95 | 1.51e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 20/200 | 1.95 | 1.56e-03 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 11/200 | 2.50 | 1.69e-03 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 11/200 | 2.49 | 1.73e-03 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 11/200 | 2.45 | 1.98e-03 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 12/200 | 2.24 | 3.06e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 16/200 | 1.90 | 4.96e-03 | - | no |
| PS | 3 | PO:0009005 | root | 129/200 | 1.43 | 8.93e-09 | - | no |
| PS | 5 | PO:0008037 | seedling | 123/200 | 1.39 | 2.65e-07 | - | no |
| PS | 4 | PO:0009009 | embryo | 127/200 | 1.31 | 5.40e-06 | - | no |
| PS | 3 | PO:0009010 | seed | 127/200 | 1.30 | 1.17e-05 | - | no |
| PS | 4 | PO:0009001 | fruit | 127/200 | 1.29 | 1.61e-05 | - | no |
| PS | 3 | PO:0006342 | infructescence | 127/200 | 1.29 | 1.61e-05 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 43/200 | 1.48 | 2.99e-03 | - | no |
| PS | 4 | PO:0009047 | stem | 103/200 | 1.22 | 3.15e-03 | - | no |
| PS | 5 | PO:0009046 | flower | 122/200 | 1.17 | 4.24e-03 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 108/200 | 1.20 | 4.29e-03 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 122/200 | 1.17 | 5.48e-03 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 101/200 | 1.20 | 5.86e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 89/200 | 1.21 | 9.60e-03 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 123/200 | 1.17 | 3.72e-03 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 113/200 | 1.17 | 9.49e-03 | - | no |
| KW | 0 | hypocotyl | - | 20/200 | 8.57 | 3.07e-14 | - | no |
| KW | 0 | lipid | - | 12/200 | 3.49 | 4.69e-05 | - | no |
| KW | 0 | globular | - | 11/200 | 2.93 | 4.30e-04 | - | no |
| KW | 0 | metabolic | - | 23/200 | 2.00 | 5.28e-04 | - | no |
| KW | 0 | transport | - | 20/200 | 2.06 | 7.94e-04 | - | no |
| KW | 0 | stress | - | 11/200 | 2.34 | 2.84e-03 | - | no |
| KW | 0 | system | - | 36/200 | 1.49 | 5.67e-03 | - | no |
| KW | 0 | endomembrane | - | 35/200 | 1.48 | 6.66e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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