AT2G05810.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220581001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G25140.1 | 0.818522 | QUA1 (QUASIMODO 1) | OMAT3P009440 | - | - | - |
| AT3G54630.1 | 0.792442 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G11890.1 | 0.79159 | FUNCTIONS IN: molecular_function unknown | OMAT5P004060 | - | - | - |
| AT4G20430.1 | 0.785034 | subtilase family protein | OMAT4P105190 | - | - | - |
| AT5G28913.1 | 0.775889 | transposable element gene | OMAT5P108430 | - | - | - |
| AT1G53050.1 | 0.774146 | protein kinase family protein | OMAT1P014620 | - | - | - |
| AT3G06035.1 | 0.76955 | unknown protein | OMAT3P102030 | - | - | - |
| AT4G25840.1 | 0.768093 | GPP1 (glycerol-3-phosphatase 1) | - | - | - | - |
| AT4G17100.1 | 0.767674 | unknown protein | OMAT4P104210 | - | OMAT4P005050 | - |
| AT3G20150.1 | 0.767646 | kinesin motor family protein | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G02060.1 | -0.812875 | transcription factor | OMAT2P000310 | - | - | - |
| AT2G43820.1 | -0.80659 | UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2) | OMAT2P012100 | - | OMAT2P111250 | - |
| AT5G63195.1 | -0.796339 | other RNA | OMAT5P117090 | - | OMAT5P019370 | - |
| AT5G65110.1 | -0.79085 | ACX2 (ACYL-COA OXIDASE 2) | OMAT5P117830 | - | OMAT5P020070 | - |
| AT1G75770.1 | -0.782405 | unknown protein | OMAT1P022140 | - | - | - |
| AT5G44250.1 | -0.78193 | unknown protein | OMAT5P110810 | - | - | - |
| AT3G10770.1 | -0.774328 | nucleic acid binding | OMAT3P103500 | - | OMAT3P003780 | - |
| AT2G19790.1 | -0.767972 | clathrin adaptor complex small chain family protein | OMAT2P003350 | - | - | - |
| AT1G69795.1 | -0.766476 | MIR395E | - | - | - | - |
| ath-MIR395e | -0.766476 | ath-MIR395e | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.50e-14 | :20 terms with high significance | |
| 1.50e-14 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0023033 | signaling pathway | 11/200 | 3.25 | 1.67e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 10/200 | 3.23 | 3.06e-04 | - | no |
| B | 5 | GO:0006464 | protein modification process | 22/200 | 2.11 | 3.21e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 22/200 | 1.94 | 1.03e-03 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 13/200 | 2.20 | 2.66e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 16/200 | 1.79 | 8.75e-03 | - | no |
| C | 4 | GO:0044430 | cytoskeletal part | 11/200 | 11.65 | 2.28e-10 | - | no |
| C | 5 | GO:0005856 | cytoskeleton | 11/200 | 9.78 | 1.71e-09 | - | no |
| C | 3 | GO:0016020 | membrane | 58/200 | 2.12 | 4.55e-09 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 34/200 | 2.74 | 2.42e-08 | - | no |
| C | 5 | GO:0005794 | Golgi apparatus | 10/200 | 7.63 | 9.80e-08 | - | no |
| C | 3 | GO:0044464 | cell part | 120/200 | 1.31 | 1.86e-05 | - | no |
| C | 3 | GO:0043234 | protein complex | 13/200 | 1.99 | 6.37e-03 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| M | 3 | GO:0016740 | transferase activity | 34/200 | 2.08 | 1.47e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 19/200 | 2.36 | 1.79e-04 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 16/200 | 2.58 | 1.82e-04 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 21/200 | 2.02 | 7.54e-04 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 19/200 | 2.10 | 7.90e-04 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 19/200 | 2.10 | 7.90e-04 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 19/200 | 2.09 | 8.16e-04 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 19/200 | 2.07 | 9.35e-04 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 23/200 | 1.74 | 3.40e-03 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 10/200 | 2.25 | 5.42e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 10/200 | 2.23 | 5.81e-03 | - | no |
| PS | 5 | PO:0009052 | pedicel | 142/200 | 1.75 | 8.37e-19 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 145/200 | 1.69 | 6.88e-18 | - | yes |
| PS | 3 | PO:0009032 | petal | 144/200 | 1.64 | 1.67e-16 | - | yes |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 138/200 | 1.67 | 4.97e-16 | - | yes |
| PS | 4 | PO:0009025 | leaf | 147/200 | 1.60 | 6.38e-16 | 3.00E-06 | yes |
| PS | 5 | PO:0000013 | cauline leaf | 131/200 | 1.70 | 3.85e-15 | - | yes |
| PS | 3 | PO:0009013 | meristem | 134/200 | 1.67 | 4.64e-15 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 147/200 | 1.56 | 8.79e-15 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 147/200 | 1.56 | 8.79e-15 | - | yes |
| PS | 5 | PO:0020038 | petiole | 129/200 | 1.69 | 9.93e-15 | - | yes |
| PS | 4 | PO:0009009 | embryo | 148/200 | 1.53 | 3.36e-14 | - | yes |
| PS | 5 | PO:0008037 | seedling | 140/200 | 1.59 | 3.73e-14 | - | yes |
| PS | 3 | PO:0009006 | shoot | 158/200 | 1.46 | 7.44e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 154/200 | 1.48 | 7.71e-14 | - | yes |
| PS | 3 | PO:0009010 | seed | 148/200 | 1.51 | 1.20e-13 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 154/200 | 1.47 | 1.47e-13 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 152/200 | 1.48 | 1.68e-13 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 128/200 | 1.65 | 1.74e-13 | - | yes |
| PS | 4 | PO:0009001 | fruit | 148/200 | 1.50 | 2.03e-13 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 148/200 | 1.50 | 2.03e-13 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 134/200 | 1.60 | 2.55e-13 | - | yes |
| PS | 3 | PO:0009005 | root | 139/200 | 1.54 | 6.82e-13 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 138/200 | 1.53 | 1.98e-12 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 123/200 | 1.48 | 3.59e-09 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 118/200 | 1.41 | 3.96e-07 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 105/200 | 1.43 | 1.84e-06 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 24/200 | 2.16 | 1.33e-04 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 24/200 | 2.14 | 1.48e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 25/200 | 2.10 | 1.58e-04 | - | no |
| PS | 4 | PO:0000293 | guard cell | 23/200 | 2.14 | 2.05e-04 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 23/200 | 2.13 | 2.19e-04 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 23/200 | 2.12 | 2.24e-04 | - | no |
| PS | 4 | PO:0005679 | epidermis | 25/200 | 2.02 | 2.83e-04 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 25/200 | 2.02 | 2.85e-04 | - | no |
| PS | 4 | PO:0009047 | stem | 108/200 | 1.28 | 2.89e-04 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 23/200 | 2.04 | 4.06e-04 | - | no |
| PS | 4 | PO:0004011 | initial cell | 23/200 | 2.03 | 4.44e-04 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 23/200 | 2.02 | 4.54e-04 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 45/200 | 1.39 | 7.87e-03 | - | no |
| PS | 3 | PO:0020097 | generative cell | 45/200 | 1.39 | 7.87e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 143/200 | 1.80 | 2.11e-20 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 146/200 | 1.76 | 3.64e-20 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 145/200 | 1.76 | 6.16e-20 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 142/200 | 1.73 | 2.18e-18 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 149/200 | 1.65 | 8.66e-18 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 148/200 | 1.64 | 1.96e-17 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 156/200 | 1.53 | 6.67e-16 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 156/200 | 1.49 | 1.50e-14 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 149/200 | 1.54 | 1.53e-14 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 126/200 | 1.64 | 6.11e-13 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 126/200 | 1.64 | 6.40e-13 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 131/200 | 1.56 | 6.70e-12 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 131/200 | 1.56 | 6.82e-12 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 131/200 | 1.55 | 1.21e-11 | - | yes |
| KW | 0 | microtubule | - | 11/200 | 10.70 | 6.13e-10 | - | no |
| KW | 0 | membrane | - | 57/200 | 2.14 | 4.26e-09 | - | no |
| KW | 0 | plasma | - | 32/200 | 2.79 | 4.16e-08 | - | no |
| KW | 0 | golgi | - | 10/200 | 6.02 | 1.03e-06 | - | no |
| KW | 0 | kinase | - | 26/200 | 2.46 | 7.39e-06 | - | no |
| KW | 0 | pathway | - | 10/200 | 3.72 | 9.16e-05 | - | no |
| KW | 0 | ipr000719 | - | 16/200 | 2.57 | 1.90e-04 | - | no |
| KW | 0 | ipr017442 | - | 14/200 | 2.66 | 2.92e-04 | - | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | glycosyl | - | 12/200 | 2.81 | 3.91e-04 | - | no |
| KW | 0 | related | - | 44/200 | 1.57 | 8.06e-04 | 3.00E-06 | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | amino | - | 18/200 | 2.09 | 1.10e-03 | - | no |
| KW | 0 | signaling | - | 10/200 | 2.69 | 1.40e-03 | - | no |
| KW | 0 | serine | - | 18/200 | 2.02 | 1.63e-03 | - | no |
| KW | 0 | carbohydrate | - | 10/200 | 2.55 | 2.10e-03 | - | no |
| KW | 0 | phosphorylation | - | 13/200 | 2.12 | 3.72e-03 | - | no |
| KW | 0 | threonine | - | 15/200 | 2.00 | 3.73e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| KW | 0 | transmembrane | - | 14/200 | 1.93 | 6.56e-03 | - | no |
| KW | 0 | function | - | 25/200 | 1.60 | 7.10e-03 | - | no |
| KW | 0 | receptor | - | 10/200 | 2.10 | 8.73e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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