Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G43690.1	0.925817	ubiquitin interaction motif-containing protein	OMAT1P012480	-	-	-
AT1G80910.1	0.903821	unknown protein	OMAT1P024270	-	-	-
AT1G54990.1	0.896165	AXR4 (AUXIN RESISTANT 4)	OMAT1P015290	-	-	-
AT5G09420.1	0.89537	ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V)	OMAT5P003160	-	-	-
AT2G36730.1	0.892486	pentatricopeptide (PPR) repeat-containing protein	-	-	-	-
AT4G38270.1	0.891294	GAUT3 (Galacturonosyltransferase 3)	OMAT4P013330	-	-	-
AT5G56010.1	0.890241	HSP81-3	OMAT5P016590	-	-	-
AT1G77310.1	0.886492	FUNCTIONS IN: molecular_function unknown	-	-	-	-
AT5G48330.1	0.884049	regulator of chromosome condensation (RCC1) family protein	-	-	-	-
AT3G23100.1	0.884004	XRCC4	-	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT4G34350.1	-0.895511	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	OMAT4P110040	-	OMAT4P011690	-
AT1G53670.1	-0.885422	MSRB1 (methionine sulfoxide reductase B 1)	OMAT1P014870	-	-	-
AT2G25080.1	-0.87826	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	OMAT2P005180	-	-	-
AT2G13360.1	-0.865285	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	OMAT2P101490	-	OMAT2P001600	-
AT2G34430.1	-0.861406	LHB1B1	OMAT2P008520	-	-	-
AT4G28030.1	-0.859253	GCN5-related N-acetyltransferase (GNAT) family protein	OMAT4P107812	-	-	-
AT1G23130.1	-0.85266	Bet v I allergen family protein	OMAT1P008520	-	OMAT1P107490	-
AT1G22850.1	-0.852008	INVOLVED IN: biological_process unknown	OMAT1P107350	-	-	-
AT1G78830.1	-0.840222	curculin-like (mannose-binding) lectin family protein	OMAT1P120720	-	OMAT1P023460	-
AT1G40125.1	-0.835752	transposable element gene	-	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 8.41e-24	:20 terms with high significance
8.41e-24 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	3	GO:0022414	reproductive process	14/200	2.32	1.15e-03	-	yes
B	4	GO:0044260	cellular macromolecule metabolic process	50/200	1.42	3.22e-03	-	yes
B	3	GO:0003006	reproductive developmental process	12/200	2.18	3.82e-03	-	no
B	5	GO:0044267	cellular protein metabolic process	31/200	1.52	6.93e-03	-	no
B	3	GO:0043170	macromolecule metabolic process	52/200	1.34	8.23e-03	-	yes

C	3	GO:0005622	intracellular	94/200	1.77	1.90e-10	-	yes
C	5	GO:0005739	mitochondrion	25/200	3.91	1.52e-09	-	no
C	3	GO:0044424	intracellular part	87/200	1.71	9.27e-09	-	yes
C	3	GO:0043229	intracellular organelle	80/200	1.73	2.86e-08	-	yes
C	5	GO:0005730	nucleolus	11/200	6.42	1.82e-07	-	no
C	4	GO:0043231	intracellular membrane-bounded organelle	74/200	1.68	4.18e-07	-	yes
C	3	GO:0043227	membrane-bounded organelle	74/200	1.68	4.21e-07	-	yes
C	5	GO:0031981	nuclear lumen	12/200	4.96	1.12e-06	-	no
C	4	GO:0044428	nuclear part	14/200	4.21	1.49e-06	-	yes
C	3	GO:0043228	non-membrane-bounded organelle	19/200	3.19	2.60e-06	-	yes
C	4	GO:0043232	intracellular non-membrane-bounded organelle	19/200	3.19	2.60e-06	-	yes
C	4	GO:0070013	intracellular organelle lumen	12/200	4.42	3.94e-06	-	no
C	3	GO:0043233	organelle lumen	12/200	4.41	4.04e-06	-	no
C	5	GO:0005634	nucleus	34/200	2.17	5.61e-06	3.64E-21	yes
C	3	GO:0044446	intracellular organelle part	31/200	2.16	1.59e-05	-	yes
C	3	GO:0044422	organelle part	31/200	2.16	1.62e-05	-	yes
C	4	GO:0044444	cytoplasmic part	57/200	1.64	3.19e-05	-	no
C	4	GO:0005737	cytoplasm	60/200	1.60	3.89e-05	-	no
C	5	GO:0005829	cytosol	10/200	2.42	3.16e-03	-	no

M	3	GO:0000166	nucleotide binding	32/200	2.42	1.05e-06	-	no
M	3	GO:0003676	nucleic acid binding	46/200	1.94	3.01e-06	5.00E-16	yes
M	4	GO:0003723	RNA binding	15/200	2.16	1.74e-03	5.00E-16	no
M	5	GO:0032555	purine ribonucleotide binding	18/200	1.83	4.67e-03	-	no
M	4	GO:0032553	ribonucleotide binding	18/200	1.83	4.67e-03	-	no
M	4	GO:0017076	purine nucleotide binding	18/200	1.73	8.32e-03	-	no

PS	4	PO:0000037	shoot apex	168/200	1.95	5.72e-34	-	yes
PS	5	PO:0009052	pedicel	159/200	1.96	4.16e-30	-	yes
PS	4	PO:0009009	embryo	169/200	1.75	1.75e-27	-	yes
PS	3	PO:0009010	seed	169/200	1.73	1.03e-26	-	yes
PS	4	PO:0009001	fruit	169/200	1.72	2.17e-26	-	yes
PS	3	PO:0006342	infructescence	169/200	1.72	2.17e-26	-	yes
PS	5	PO:0008034	leaf whorl	165/200	1.75	6.46e-26	-	yes
PS	4	PO:0008033	phyllome whorl	165/200	1.75	6.46e-26	-	yes
PS	4	PO:0009047	stem	155/200	1.84	4.09e-25	-	yes
PS	5	PO:0009046	flower	171/200	1.64	1.99e-24	-	yes
PS	4	PO:0009049	inflorescence	171/200	1.63	4.68e-24	-	yes
PS	4	PO:0009025	leaf	160/200	1.74	8.41e-24	-	yes
PS	3	PO:0009006	shoot	173/200	1.59	2.85e-23	-	yes
PS	3	PO:0006001	phyllome	168/200	1.64	4.24e-23	-	yes
PS	5	PO:0020039	leaf lamina	150/200	1.82	5.34e-23	-	yes
PS	3	PO:0009005	root	157/200	1.74	5.81e-23	-	yes
PS	3	PO:0009031	sepal	159/200	1.72	7.16e-23	-	yes
PS	5	PO:0008037	seedling	155/200	1.76	1.12e-22	-	yes
PS	5	PO:0000013	cauline leaf	142/200	1.84	3.48e-21	-	yes
PS	3	PO:0009032	petal	152/200	1.73	3.96e-21	-	yes
PS	5	PO:0020038	petiole	139/200	1.83	4.46e-20	-	yes
PS	5	PO:0009027	megasporophyll	143/200	1.70	6.68e-18	-	yes
PS	4	PO:0009026	sporophyll	147/200	1.63	6.59e-17	-	yes
PS	5	PO:0009028	microsporophyll	140/200	1.67	2.46e-16	-	yes
PS	3	PO:0009013	meristem	136/200	1.69	4.51e-16	-	yes
PS	4	PO:0000230	inflorescence meristem	133/200	1.71	6.45e-16	-	yes
PS	3	PO:0000084	sperm cell	79/200	2.43	6.98e-16	-	yes
PS	3	PO:0020097	generative cell	79/200	2.43	6.98e-16	-	yes
PS	3	PO:0020091	male gametophyte	136/200	1.64	9.12e-15	-	yes
PS	4	PO:0020030	cotyledon	119/200	1.62	1.75e-11	-	yes
PS	4	PO:0000293	guard cell	19/200	1.77	5.80e-03	-	no
PS	4	PO:0000351	guard mother cell	19/200	1.76	6.08e-03	-	no
PS	3	PO:0000070	meristemoid	19/200	1.76	6.19e-03	-	no
PS	5	PO:0006016	leaf epidermis	19/200	1.71	8.22e-03	-	no
PS	3	PO:0004013	epidermal cell	20/200	1.68	8.57e-03	-	no
PS	5	PO:0006035	shoot epidermis	19/200	1.70	8.84e-03	-	no
PS	5	PO:0000349	epidermal initial	19/200	1.68	9.49e-03	-	no

PG	5	PO:0001078	E expanded cotyledon stage	169/200	2.04	3.58e-37	-	yes
PG	5	PO:0004507	D bilateral stage	168/200	2.04	9.06e-37	-	yes
PG	5	PO:0001081	F mature embryo stage	165/200	2.07	2.38e-36	-	yes
PG	3	PO:0001170	seed development stages	170/200	1.88	1.74e-32	-	yes
PG	4	PO:0007631	embryo development stages	169/200	1.88	6.47e-32	-	yes
PG	5	PO:0007604	corolla developmental stages	170/200	1.72	6.31e-27	-	yes
PG	5	PO:0001185	C globular stage	155/200	1.89	1.24e-26	-	yes
PG	4	PO:0007600	3 floral organ development stages	170/200	1.67	5.75e-25	-	yes
PG	3	PO:0007615	flower development stages	170/200	1.62	2.86e-23	-	yes
PG	4	PO:0007616	4 anthesis	161/200	1.66	1.62e-21	-	yes
PG	4	PO:0001054	4 leaf senescence stage	140/200	1.82	3.41e-20	-	yes
PG	3	PO:0001050	leaf development stages	140/200	1.82	3.61e-20	-	yes
PG	5	PO:0007133	leaf production	143/200	1.70	8.18e-18	-	yes
PG	4	PO:0007112	1 main shoot growth	143/200	1.70	8.36e-18	-	yes
PG	3	PO:0007134	A vegetative growth	143/200	1.69	1.71e-17	-	yes
PG	5	PO:0007605	androecium developmental stages	41/200	1.40	9.30e-03	-	no

KW	0	ipr002885	-	20/200	7.14	1.05e-12	-	no
KW	0	pentatricopeptide	-	20/200	6.89	2.08e-12	-	no
KW	0	containing	-	47/200	2.82	1.60e-11	5.00E-16	no
KW	0	ipr012677	-	12/200	7.76	6.36e-09	-	no
KW	0	plait	-	12/200	7.76	6.36e-09	-	no
KW	0	nucleic	-	24/200	3.67	1.07e-08	5.00E-16	yes
KW	0	nucleolus	-	11/200	8.09	1.44e-08	-	no
KW	0	motif	-	20/200	4.12	2.25e-08	-	no
KW	0	repeat	-	35/200	2.70	2.38e-08	-	no
KW	0	nucleotide	-	23/200	3.61	2.81e-08	-	no
KW	0	mitochondrion	-	21/200	3.83	3.81e-08	-	no
KW	0	ipr000504	-	11/200	7.01	7.03e-08	-	no
KW	0	folding	-	10/200	7.52	1.13e-07	-	no
KW	0	recognition	-	12/200	5.45	3.91e-07	-	no
KW	0	embryo	-	21/200	3.02	2.05e-06	-	no
KW	0	defective	-	11/200	4.49	7.44e-06	-	no
KW	0	bilateral	-	12/200	3.29	8.68e-05	-	no
KW	0	complex	-	20/200	2.36	1.27e-04	-	no
KW	0	expanded	-	13/200	2.98	1.40e-04	-	no
KW	0	subunit	-	18/200	2.46	1.54e-04	-	no
KW	0	cotyledon	-	14/200	2.66	2.88e-04	-	no
KW	0	biological_process	-	80/200	1.34	8.64e-04	-	no
KW	0	alpha	-	16/200	2.19	1.12e-03	-	no
KW	0	translation	-	12/200	2.42	1.54e-03	-	no
KW	0	small	-	10/200	2.48	2.59e-03	-	no
KW	0	nucleus	-	22/200	1.71	5.19e-03	3.64E-21	no
KW	0	intracellular	-	11/200	2.13	6.01e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

Top Page

label http://www.w3.org/2000/01/rdf-schema#label