Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT3G62060.1	0.945678	pectinacetylesterase family protein	-	-	-	-
AT4G01575.1	0.907693	serine protease inhibitor, Kazal-type family protein	OMAT4P100610	-	-	-
AT3G12110.1	0.904795	ACT11 (actin-11)	OMAT3P004240	-	-	-
AT1G04820.1	0.904452	TUA4	-	-	-	-
AT4G08685.1	0.901755	SAH7	OMAT4P002130	-	-	-
AT5G61240.1	0.898769	protein binding	-	-	-	-
AT1G68060.1	0.895476	ATMAP70-1 (microtubule-associated proteins 70-1)	OMAT1P116950	-	-	-
AT2G14890.1	0.893798	AGP9 (ARABINOGALACTAN PROTEIN 9)	OMAT2P001890	-	-	-
AT5G48460.1	0.893167	fimbrin-like protein, putative	-	-	-	-
AT2G35190.1	0.887592	NPSN11 (NOVEL PLANT SNARE 11)	OMAT2P008760	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G05870.1	-0.823045	UGT76C1 (UDP-glucosyl transferase 76C1)	OMAT5P001930	-	-	-
AT4G03020.1	-0.776394	transducin family protein / WD-40 repeat family protein	OMAT4P101040	-	-	-
AT4G21350.1	-0.763345	PUB8 (PLANT U-BOX 8)	OMAT4P105380	-	-	-
AT4G10860.1	-0.758174	unknown protein	-	-	-	-
AT5G54540.1	-0.753399	FUNCTIONS IN: molecular_function unknown	OMAT5P016040	-	-	-
AT5G37070.1	-0.73138	unknown protein	OMAT5P009950	-	-	-
AT5G60410.2	-0.728874	SIZ1	OMAT5P018400	-	-	-
AT5G35460.1	-0.720384	unknown protein	OMAT5P009760	-	-	-
AT1G01020.1	-0.709376	ARV1	-	-	-	-
AT3G54823.1	-0.709056	transposable element gene	-	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 4.60e-30	:20 terms with high significance
4.60e-30 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	5	GO:0007167	enzyme linked receptor protein signaling pathway	10/200	12.79	4.40e-10	-	no
B	4	GO:0007166	cell surface receptor linked signaling pathway	10/200	11.01	2.18e-09	-	no
B	5	GO:0006259	DNA metabolic process	11/200	5.46	1.01e-06	-	no
B	4	GO:0044255	cellular lipid metabolic process	12/200	4.46	3.58e-06	-	no
B	3	GO:0023033	signaling pathway	13/200	3.85	8.83e-06	-	no
B	4	GO:0006629	lipid metabolic process	15/200	3.45	8.83e-06	-	no
B	5	GO:0006796	phosphate metabolic process	17/200	2.56	1.33e-04	-	no
B	4	GO:0006793	phosphorus metabolic process	17/200	2.56	1.35e-04	-	no
B	4	GO:0005975	carbohydrate metabolic process	14/200	2.69	2.58e-04	-	no
B	3	GO:0044238	primary metabolic process	68/200	1.37	1.29e-03	-	no
B	5	GO:0006464	protein modification process	20/200	1.92	1.83e-03	-	no
B	4	GO:0043412	macromolecule modification	21/200	1.85	2.31e-03	-	no
B	3	GO:0044281	small molecule metabolic process	17/200	1.89	4.13e-03	-	no
B	5	GO:0043436	oxoacid metabolic process	10/200	2.27	5.01e-03	-	no
B	4	GO:0006082	organic acid metabolic process	10/200	2.27	5.11e-03	-	no
B	4	GO:0042180	cellular ketone metabolic process	10/200	2.23	5.75e-03	-	no

C	5	GO:0005856	cytoskeleton	16/200	14.23	2.01e-15	-	yes
C	4	GO:0005886	plasma membrane	44/200	3.55	2.92e-14	3.64E-21	yes
C	4	GO:0044430	cytoskeletal part	14/200	14.83	4.51e-14	-	yes
C	3	GO:0044464	cell part	139/200	1.52	3.12e-12	3.64E-10	yes
C	3	GO:0016020	membrane	62/200	2.26	7.03e-11	3.64E-21	yes
C	3	GO:0043228	non-membrane-bounded organelle	24/200	4.03	1.70e-09	-	yes
C	4	GO:0043232	intracellular non-membrane-bounded organelle	24/200	4.03	1.70e-09	-	yes
C	5	GO:0031225	anchored to membrane	10/200	6.73	3.43e-07	-	no
C	3	GO:0043234	protein complex	21/200	3.21	7.70e-07	3.64E-10	yes
C	3	GO:0030312	external encapsulating structure	14/200	4.19	1.59e-06	-	yes
C	4	GO:0005737	cytoplasm	63/200	1.68	4.62e-06	-	yes
C	4	GO:0044444	cytoplasmic part	58/200	1.67	1.57e-05	-	yes
C	3	GO:0044424	intracellular part	76/200	1.49	3.32e-05	-	yes
C	4	GO:0005618	cell wall	12/200	3.61	3.32e-05	-	yes
C	3	GO:0005622	intracellular	77/200	1.45	8.59e-05	-	yes
C	4	GO:0031224	intrinsic to membrane	14/200	2.61	3.53e-04	-	no
C	3	GO:0043229	intracellular organelle	66/200	1.43	5.01e-04	-	yes
C	3	GO:0044425	membrane part	17/200	2.15	1.05e-03	3.64E-10	no
C	3	GO:0044446	intracellular organelle part	26/200	1.81	1.13e-03	-	yes
C	3	GO:0044422	organelle part	26/200	1.81	1.15e-03	-	yes
C	4	GO:0043231	intracellular membrane-bounded organelle	58/200	1.32	7.65e-03	-	yes
C	3	GO:0043227	membrane-bounded organelle	58/200	1.32	7.68e-03	-	yes

M	3	GO:0016787	hydrolase activity	36/200	2.30	7.55e-07	-	no
M	3	GO:0016740	transferase activity	37/200	2.26	8.32e-07	-	no
M	4	GO:0017076	purine nucleotide binding	26/200	2.50	5.46e-06	-	no
M	5	GO:0032555	purine ribonucleotide binding	25/200	2.55	6.01e-06	-	no
M	4	GO:0032553	ribonucleotide binding	25/200	2.55	6.01e-06	-	no
M	5	GO:0030554	adenyl nucleotide binding	22/200	2.43	4.07e-05	-	no
M	4	GO:0001883	purine nucleoside binding	22/200	2.43	4.07e-05	-	no
M	3	GO:0001882	nucleoside binding	22/200	2.43	4.23e-05	-	no
M	3	GO:0000166	nucleotide binding	27/200	2.04	1.38e-04	1.58E-10	no
M	5	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	13/200	2.92	1.70e-04	-	no
M	5	GO:0016773	phosphotransferase activity, alcohol group as acceptor	16/200	2.58	1.82e-04	-	no
M	4	GO:0016817	hydrolase activity, acting on acid anhydrides	13/200	2.89	1.88e-04	-	no
M	5	GO:0016301	kinase activity	18/200	2.24	4.90e-04	-	no
M	4	GO:0016772	transferase activity, transferring phosphorus-containing groups	19/200	2.07	9.35e-04	-	no

PS	5	PO:0009052	pedicel	169/200	2.08	1.61e-38	-	yes
PS	3	PO:0009032	petal	170/200	1.94	1.60e-34	-	yes
PS	4	PO:0000037	shoot apex	168/200	1.95	5.72e-34	-	yes
PS	3	PO:0009031	sepal	171/200	1.85	5.57e-32	-	yes
PS	5	PO:0008034	leaf whorl	172/200	1.82	1.71e-31	-	yes
PS	4	PO:0008033	phyllome whorl	172/200	1.82	1.71e-31	-	yes
PS	4	PO:0009025	leaf	170/200	1.85	2.01e-31	1.58E-10	yes
PS	4	PO:0009001	fruit	175/200	1.78	2.53e-31	-	yes
PS	3	PO:0006342	infructescence	175/200	1.78	2.53e-31	-	yes
PS	3	PO:0006001	phyllome	178/200	1.74	3.68e-31	-	yes
PS	5	PO:0020039	leaf lamina	161/200	1.95	7.34e-31	-	yes
PS	3	PO:0009010	seed	174/200	1.78	8.46e-31	-	yes
PS	4	PO:0009009	embryo	173/200	1.79	9.29e-31	-	yes
PS	5	PO:0020038	petiole	154/200	2.02	4.60e-30	-	yes
PS	3	PO:0009006	shoot	179/200	1.65	3.83e-28	-	yes
PS	5	PO:0009046	flower	175/200	1.68	1.36e-27	-	yes
PS	4	PO:0009049	inflorescence	175/200	1.67	3.37e-27	-	yes
PS	5	PO:0000013	cauline leaf	150/200	1.94	2.24e-26	-	yes
PS	5	PO:0008037	seedling	159/200	1.80	2.11e-25	-	yes
PS	5	PO:0009027	megasporophyll	155/200	1.85	2.25e-25	-	yes
PS	3	PO:0009005	root	158/200	1.76	1.23e-23	-	yes
PS	4	PO:0009026	sporophyll	157/200	1.74	5.95e-23	-	yes
PS	3	PO:0009013	meristem	140/200	1.74	3.24e-18	-	yes
PS	3	PO:0020091	male gametophyte	141/200	1.70	2.34e-17	-	yes
PS	4	PO:0000230	inflorescence meristem	134/200	1.72	1.97e-16	-	yes
PS	5	PO:0009028	microsporophyll	136/200	1.62	2.57e-14	-	yes
PS	4	PO:0020030	cotyledon	115/200	1.57	7.11e-10	-	yes
PS	4	PO:0005679	epidermis	30/200	2.42	2.24e-06	-	yes
PS	3	PO:0009014	dermal tissue	30/200	2.42	2.26e-06	-	yes
PS	5	PO:0006035	shoot epidermis	28/200	2.50	2.57e-06	-	yes
PS	3	PO:0004013	epidermal cell	29/200	2.43	3.03e-06	-	yes
PS	4	PO:0000293	guard cell	27/200	2.51	3.56e-06	-	yes
PS	4	PO:0000351	guard mother cell	27/200	2.50	3.87e-06	-	yes
PS	3	PO:0000070	meristemoid	27/200	2.49	3.99e-06	-	yes
PS	5	PO:0006016	leaf epidermis	27/200	2.43	6.60e-06	-	yes
PS	5	PO:0000349	epidermal initial	27/200	2.39	8.55e-06	-	yes
PS	4	PO:0009047	stem	114/200	1.35	8.76e-06	-	yes
PS	4	PO:0004011	initial cell	27/200	2.38	9.62e-06	-	yes
PS	3	PO:0004010	meristematic cell	27/200	2.38	9.90e-06	-	yes
PS	4	PO:0006345	pollen tube	48/200	1.65	1.38e-04	1.58E-10	yes
PS	3	PO:0000084	sperm cell	51/200	1.57	2.76e-04	-	no
PS	3	PO:0020097	generative cell	51/200	1.57	2.76e-04	-	no

PG	5	PO:0001081	F mature embryo stage	168/200	2.11	4.95e-39	-	yes
PG	5	PO:0001185	C globular stage	168/200	2.05	5.09e-37	-	yes
PG	5	PO:0001078	E expanded cotyledon stage	168/200	2.02	2.82e-36	-	yes
PG	5	PO:0004507	D bilateral stage	167/200	2.03	6.95e-36	-	yes
PG	4	PO:0007631	embryo development stages	173/200	1.92	2.03e-35	-	yes
PG	3	PO:0001170	seed development stages	173/200	1.91	3.95e-35	-	yes
PG	4	PO:0007600	3 floral organ development stages	176/200	1.73	7.91e-30	-	yes
PG	5	PO:0007604	corolla developmental stages	173/200	1.75	2.35e-29	-	yes
PG	4	PO:0007616	4 anthesis	171/200	1.76	7.43e-29	-	yes
PG	3	PO:0007615	flower development stages	176/200	1.68	5.53e-28	-	yes
PG	4	PO:0001054	4 leaf senescence stage	148/200	1.92	3.10e-25	-	yes
PG	3	PO:0001050	leaf development stages	148/200	1.92	3.30e-25	-	yes
PG	3	PO:0007134	A vegetative growth	151/200	1.78	3.09e-22	-	yes
PG	5	PO:0007133	leaf production	150/200	1.78	5.82e-22	-	yes
PG	4	PO:0007112	1 main shoot growth	150/200	1.78	5.97e-22	-	yes
PG	5	PO:0007605	androecium developmental stages	44/200	1.50	1.89e-03	-	yes

KW	0	plasma	-	42/200	3.66	4.11e-14	3.64E-21	yes
KW	0	microtubule	-	12/200	11.67	4.26e-11	3.64E-10	yes
KW	0	ipr013210	-	12/200	9.11	9.17e-10	-	no
KW	0	membrane	-	58/200	2.18	1.54e-09	3.64E-21	yes
KW	0	terminal	-	46/200	2.39	6.53e-09	-	yes
KW	0	anchored	-	10/200	6.52	4.71e-07	-	no
KW	0	ipr001611	-	13/200	4.60	1.13e-06	-	no
KW	0	pathway	-	11/200	4.09	1.89e-05	-	no
KW	0	signaling	-	13/200	3.49	2.57e-05	-	no
KW	0	tyrosine	-	12/200	3.38	6.53e-05	-	no
KW	0	complex	-	20/200	2.36	1.27e-04	3.64E-10	yes
KW	0	serine	-	20/200	2.24	2.54e-04	-	no
KW	0	leucine	-	14/200	2.67	2.81e-04	-	no
KW	0	receptor	-	13/200	2.73	3.34e-04	-	no
KW	0	phosphorylation	-	15/200	2.44	4.91e-04	-	no
KW	0	ipr000719	-	15/200	2.41	5.69e-04	-	no
KW	0	threonine	-	17/200	2.27	5.72e-04	-	no
KW	0	ipr011009	-	15/200	2.32	8.41e-04	-	no
KW	0	structural	-	10/200	2.85	8.66e-04	4.36E-20	yes
KW	0	ipr017442	-	13/200	2.47	9.06e-04	-	no
KW	0	glycosyl	-	11/200	2.58	1.30e-03	-	no
KW	0	kinase	-	20/200	1.89	2.15e-03	-	no
KW	0	amino	-	17/200	1.97	2.66e-03	1.80E-15	no
KW	0	encodes	-	38/200	1.49	4.43e-03	2.96E-10	yes
KW	0	transmembrane	-	14/200	1.93	6.56e-03	-	no
KW	0	conserved	-	22/200	1.63	9.07e-03	3.05E-16	yes

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

Top Page

label http://www.w3.org/2000/01/rdf-schema#label