ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT2G37010.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u223701001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G20135.1 | 0.984429 | hydrolase, acting on ester bonds / lipase | - | - | - | - |
| AT4G04077.1 | 0.982991 | other RNA | OMAT4P001400 | - | - | - |
| AT2G16505.1 | 0.982606 | Encodes a Maternally expressed gene (MEG) family protein | OMAT2P102030 | - | - | - |
| AT3G13850.1 | 0.976453 | LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) | - | - | - | - |
| AT5G25320.1 | 0.975886 | ACT domain-containing protein | - | - | - | - |
| AT1G44120.1 | 0.974723 | C2 domain-containing protein / armadillo/beta-catenin repeat family protein | OMAT1P012580 | - | - | - |
| AT3G04360.1 | 0.972221 | FUNCTIONS IN: molecular_function unknown | OMAT3P101400 | - | OMAT3P001460 | - |
| AT3G07830.1 | 0.971466 | polygalacturonase, putative / pectinase, putative | OMAT3P102710 | - | - | - |
| AT3G13227.1 | 0.971389 | serine-rich protein-related | - | - | - | - |
| AT4G02140.1 | 0.969691 | unknown protein | OMAT4P100810 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G02650.1 | -0.665503 | unknown protein | - | - | - | - |
| AT4G33900.1 | -0.60179 | kelch repeat-containing F-box family protein | - | - | - | - |
| AT3G22890.1 | -0.595865 | APS1 (ATP SULFURYLASE 1) | OMAT3P008640 | - | - | - |
| AT4G06654.1 | -0.587197 | transposable element gene | - | - | - | - |
| AT1G50190.1 | -0.580928 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT4G39020.1 | -0.570336 | SH3 domain-containing protein | - | - | - | - |
| AT5G60620.1 | -0.5669 | phospholipid/glycerol acyltransferase family protein | - | - | - | - |
| AT1G64850.1 | -0.56347 | calcium-binding EF hand family protein | OMAT1P115990 | - | - | - |
| AT1G75630.1 | -0.561547 | AVA-P4 | OMAT1P022110 | - | - | - |
| AT3G07425.1 | -0.559942 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 6.26e-13 | :20 terms with high significance | |
| 6.26e-13 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0032989 | cellular component morphogenesis | 12/200 | 7.18 | 1.62e-08 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 14/200 | 5.04 | 1.56e-07 | - | no |
| B | 4 | GO:0030154 | cell differentiation | 10/200 | 5.30 | 3.56e-06 | - | no |
| B | 5 | GO:0042157 | lipoprotein metabolic process | 12/200 | 4.42 | 3.94e-06 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 12/200 | 3.57 | 3.78e-05 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 18/200 | 2.71 | 4.23e-05 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 18/200 | 2.71 | 4.28e-05 | - | no |
| B | 5 | GO:0006464 | protein modification process | 23/200 | 2.21 | 1.25e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 23/200 | 2.03 | 4.41e-04 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 10/200 | 2.68 | 1.43e-03 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 10/200 | 2.30 | 4.58e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 78/200 | 3.21 | 6.71e-23 | - | yes |
| C | 3 | GO:0044464 | cell part | 134/200 | 1.46 | 4.06e-10 | - | yes |
| C | 3 | GO:0048046 | apoplast | 10/200 | 5.07 | 5.39e-06 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 18/200 | 8.99 | 2.13e-13 | - | no |
| M | 3 | GO:0004857 | enzyme inhibitor activity | 12/200 | 11.47 | 5.30e-11 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 26/200 | 4.38 | 6.12e-11 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 39/200 | 2.50 | 3.05e-08 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 18/200 | 2.90 | 1.69e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 19/200 | 2.36 | 1.79e-04 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 19/200 | 2.07 | 9.35e-04 | - | no |
| M | 3 | GO:0016740 | transferase activity | 26/200 | 1.59 | 6.91e-03 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 16/200 | 1.76 | 9.90e-03 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 123/200 | 4.22 | 1.19e-53 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 134/200 | 1.62 | 8.43e-14 | - | yes |
| PS | 3 | PO:0009031 | sepal | 132/200 | 1.43 | 5.11e-09 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 142/200 | 1.36 | 2.24e-08 | - | yes |
| PS | 5 | PO:0009046 | flower | 141/200 | 1.36 | 3.18e-08 | - | yes |
| PS | 3 | PO:0009006 | shoot | 142/200 | 1.31 | 4.22e-07 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 120/200 | 1.27 | 9.80e-05 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 120/200 | 1.27 | 9.80e-05 | - | no |
| PS | 3 | PO:0009032 | petal | 113/200 | 1.29 | 1.18e-04 | - | no |
| PS | 3 | PO:0006001 | phyllome | 127/200 | 1.24 | 1.83e-04 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 123/200 | 4.20 | 2.13e-53 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 143/200 | 1.40 | 9.41e-10 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 144/200 | 1.37 | 4.22e-09 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 131/200 | 1.35 | 4.10e-07 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 123/200 | 1.25 | 2.10e-04 | - | no |
| KW | 0 | germinated | - | 109/200 | 19.70 | 2.02e-117 | - | yes |
| KW | 0 | pollen | - | 121/200 | 13.56 | 3.63e-112 | - | yes |
| KW | 0 | mature | - | 111/200 | 12.41 | 6.25e-97 | - | yes |
| KW | 0 | anthesis | - | 115/200 | 8.75 | 1.23e-83 | - | yes |
| KW | 0 | stage | - | 128/200 | 6.61 | 2.68e-80 | - | yes |
| KW | 0 | globular | - | 75/200 | 19.98 | 1.99e-78 | - | no |
| KW | 0 | petal | - | 107/200 | 7.33 | 1.10e-68 | - | no |
| KW | 0 | expansion | - | 107/200 | 7.28 | 2.36e-68 | - | no |
| KW | 0 | differentiation | - | 108/200 | 7.14 | 2.86e-68 | - | no |
| KW | 0 | endomembrane | - | 78/200 | 3.30 | 1.18e-23 | - | yes |
| KW | 0 | system | - | 78/200 | 3.22 | 5.64e-23 | - | yes |
| KW | 0 | pectin | - | 22/200 | 14.52 | 1.63e-20 | - | no |
| KW | 0 | pectinesterase | - | 17/200 | 18.12 | 3.98e-18 | - | no |
| KW | 0 | sepal | - | 19/200 | 8.80 | 7.54e-14 | - | no |
| KW | 0 | ipr006501 | - | 12/200 | 16.22 | 6.26e-13 | - | no |
| KW | 0 | ipr012334 | - | 12/200 | 12.55 | 1.70e-11 | - | no |
| KW | 0 | ipr011050 | - | 12/200 | 12.32 | 2.15e-11 | - | no |
| KW | 0 | virulence | - | 12/200 | 12.17 | 2.51e-11 | - | no |
| KW | 0 | gametophyte | - | 21/200 | 5.35 | 8.52e-11 | - | yes |
| KW | 0 | inhibitor | - | 18/200 | 6.02 | 2.17e-10 | - | no |
| KW | 0 | lipid | - | 17/200 | 4.95 | 1.34e-08 | - | no |
| KW | 0 | flower | - | 25/200 | 3.27 | 5.49e-08 | - | yes |
| KW | 0 | calcium | - | 14/200 | 5.25 | 9.06e-08 | - | no |
| KW | 0 | lyase | - | 12/200 | 6.05 | 1.20e-07 | - | no |
| KW | 0 | similarity | - | 13/200 | 5.40 | 1.65e-07 | - | no |
| KW | 0 | member | - | 29/200 | 2.65 | 5.38e-07 | - | yes |
| KW | 0 | apoplast | - | 10/200 | 5.96 | 1.14e-06 | - | no |
| KW | 0 | sequence | - | 15/200 | 3.95 | 1.61e-06 | - | no |
| KW | 0 | myristoylation | - | 12/200 | 4.73 | 1.91e-06 | - | no |
| KW | 0 | whorl | - | 11/200 | 4.70 | 4.72e-06 | - | no |
| KW | 0 | active | - | 22/200 | 2.69 | 8.48e-06 | - | no |
| KW | 0 | serine | - | 23/200 | 2.58 | 1.08e-05 | - | no |
| KW | 0 | amino | - | 22/200 | 2.55 | 1.90e-05 | - | no |
| KW | 0 | signaling | - | 13/200 | 3.49 | 2.57e-05 | - | no |
| KW | 0 | ipr008271 | - | 15/200 | 3.07 | 3.61e-05 | - | no |
| KW | 0 | terminal | - | 37/200 | 1.92 | 3.71e-05 | - | no |
| KW | 0 | phosphorylation | - | 17/200 | 2.77 | 5.04e-05 | - | no |
| KW | 0 | ipr000719 | - | 17/200 | 2.73 | 6.00e-05 | - | no |
| KW | 0 | threonine | - | 19/200 | 2.53 | 6.99e-05 | - | no |
| KW | 0 | ipr011009 | - | 17/200 | 2.63 | 9.56e-05 | - | no |
| KW | 0 | enzyme | - | 11/200 | 3.26 | 1.64e-04 | - | no |
| KW | 0 | ipr002290 | - | 10/200 | 3.39 | 2.04e-04 | - | no |
| KW | 0 | ipr017441 | - | 12/200 | 2.79 | 4.18e-04 | - | no |
| KW | 0 | ipr017442 | - | 13/200 | 2.47 | 9.06e-04 | - | no |
| KW | 0 | carbohydrate | - | 10/200 | 2.55 | 2.10e-03 | - | no |
| KW | 0 | kinase | - | 20/200 | 1.89 | 2.15e-03 | - | no |
| KW | 0 | biological_process | - | 78/200 | 1.30 | 2.27e-03 | - | no |
| KW | 0 | hydrolase | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | signal | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | catalytic | - | 18/200 | 1.77 | 6.72e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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