ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G02885.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320288501000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G38940.1 | 0.922824 | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) | OMAT2P010210 | - | - | - |
| AT1G07880.2 | 0.865364 | ATMPK13 | - | - | - | - |
| AT5G43370.1 | 0.849439 | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) | - | - | - | - |
| AT1G58280.2 | 0.847083 | LOCATED IN: chloroplast | - | - | - | - |
| AT5G43360.1 | 0.843212 | PHT3 (PHOSPHATE TRANSPORTER 3) | OMAT5P011990 | - | - | - |
| AT1G71930.1 | 0.836876 | VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7) | - | - | - | - |
| AT5G66815.1 | 0.836867 | unknown protein | - | - | - | - |
| AT2G25180.1 | 0.831844 | ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12) | - | - | - | - |
| AT5G66390.1 | 0.831502 | peroxidase 72 (PER72) (P72) (PRXR8) | OMAT5P118270 | - | - | - |
| AT5G64120.1 | 0.825781 | peroxidase, putative | OMAT5P117460 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G15860.1 | -0.78647 | transposable element gene | - | - | - | - |
| AT3G42356.1 | -0.783568 | transposable element gene | - | - | - | - |
| AT1G09795.1 | -0.777907 | ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) | OMAT1P003390 | - | - | - |
| AT3G50360.1 | -0.772 | ATCEN2 (CENTRIN2) | OMAT3P013350 | - | - | - |
| AT4G04405.1 | -0.767316 | transposable element gene | - | - | - | - |
| AT1G57690.1 | -0.76171 | F-box family protein | - | - | - | - |
| AT4G04000.1 | -0.756047 | transposable element gene | - | - | - | - |
| AT5G28253.1 | -0.753647 | transposable element gene | - | - | - | - |
| AT3G33555.1 | -0.745115 | transposable element gene | - | - | - | - |
| AT3G11860.1 | -0.736608 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.59e-08 | :20 terms with high significance | |
| 4.59e-08 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0042221 | response to chemical stimulus | 30/200 | 2.63 | 3.95e-07 | - | yes |
| B | 4 | GO:0006979 | response to oxidative stress | 10/200 | 6.11 | 8.89e-07 | - | no |
| B | 4 | GO:0006811 | ion transport | 12/200 | 4.96 | 1.12e-06 | - | no |
| B | 3 | GO:0006950 | response to stress | 27/200 | 2.18 | 4.71e-05 | - | no |
| B | 4 | GO:0006970 | response to osmotic stress | 10/200 | 3.99 | 4.94e-05 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 12/200 | 3.21 | 1.09e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 20/200 | 2.23 | 2.68e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 3 | GO:0051707 | response to other organism | 10/200 | 2.99 | 5.97e-04 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 10/200 | 2.97 | 6.15e-04 | - | no |
| B | 3 | GO:0006810 | transport | 21/200 | 2.05 | 6.37e-04 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 21/200 | 2.04 | 6.62e-04 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 10/200 | 2.77 | 1.11e-03 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 13/200 | 1.94 | 7.65e-03 | - | yes |
| C | 3 | GO:0044464 | cell part | 148/200 | 1.62 | 1.08e-16 | - | yes |
| C | 3 | GO:0012505 | endomembrane system | 60/200 | 2.47 | 4.19e-12 | - | yes |
| C | 3 | GO:0016020 | membrane | 52/200 | 1.90 | 1.17e-06 | - | no |
| C | 4 | GO:0005618 | cell wall | 12/200 | 3.61 | 3.32e-05 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 12/200 | 3.59 | 3.58e-05 | - | no |
| C | 5 | GO:0005773 | vacuole | 11/200 | 3.19 | 2.03e-04 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 25/200 | 2.02 | 2.85e-04 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 13/200 | 2.42 | 1.08e-03 | - | no |
| M | 4 | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 10/200 | 15.99 | 3.87e-11 | - | no |
| M | 3 | GO:0004601 | peroxidase activity | 10/200 | 15.99 | 3.87e-11 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 34/200 | 2.50 | 2.22e-07 | - | no |
| M | 4 | GO:0020037 | heme binding | 11/200 | 6.29 | 2.28e-07 | - | no |
| M | 4 | GO:0043169 | cation binding | 35/200 | 2.44 | 2.90e-07 | - | no |
| M | 3 | GO:0043167 | ion binding | 35/200 | 2.44 | 2.90e-07 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 11/200 | 5.77 | 5.66e-07 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 24/200 | 2.85 | 1.29e-06 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 16/200 | 3.63 | 2.46e-06 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 17/200 | 3.03 | 1.56e-05 | - | no |
| M | 5 | GO:0015075 | ion transmembrane transporter activity | 12/200 | 3.83 | 1.83e-05 | - | no |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 16/200 | 3.10 | 1.94e-05 | - | no |
| PS | 3 | PO:0009005 | root | 158/200 | 1.76 | 1.23e-23 | - | yes |
| PS | 5 | PO:0008037 | seedling | 134/200 | 1.52 | 2.03e-11 | - | yes |
| PS | 4 | PO:0009009 | embryo | 137/200 | 1.42 | 2.37e-09 | - | yes |
| PS | 3 | PO:0009010 | seed | 137/200 | 1.40 | 6.50e-09 | - | yes |
| PS | 4 | PO:0009001 | fruit | 137/200 | 1.39 | 9.88e-09 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 137/200 | 1.39 | 9.88e-09 | - | yes |
| PS | 3 | PO:0009006 | shoot | 134/200 | 1.23 | 9.31e-05 | 1.15E-17 | yes |
| PS | 4 | PO:0009025 | leaf | 117/200 | 1.27 | 1.42e-04 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 125/200 | 1.22 | 5.30e-04 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 104/200 | 1.26 | 8.04e-04 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 93/200 | 1.27 | 1.77e-03 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 124/200 | 1.18 | 2.31e-03 | 2.20E-18 | yes |
| PS | 4 | PO:0005679 | epidermis | 22/200 | 1.78 | 3.17e-03 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 22/200 | 1.78 | 3.19e-03 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | - | no |
| PS | 5 | PO:0009046 | flower | 122/200 | 1.17 | 4.24e-03 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 125/200 | 1.19 | 1.51e-03 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 103/200 | 1.22 | 2.84e-03 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 103/200 | 1.22 | 2.86e-03 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 95/200 | 1.24 | 3.65e-03 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 103/200 | 1.22 | 3.68e-03 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 95/200 | 1.23 | 3.72e-03 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 117/200 | 1.19 | 3.82e-03 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 119/200 | 1.17 | 6.11e-03 | - | yes |
| KW | 0 | hypocotyl | - | 22/200 | 9.43 | 2.40e-16 | - | no |
| KW | 0 | allergen | - | 14/200 | 12.32 | 6.96e-13 | - | no |
| KW | 0 | system | - | 61/200 | 2.52 | 1.13e-12 | - | yes |
| KW | 0 | endomembrane | - | 60/200 | 2.54 | 1.29e-12 | - | yes |
| KW | 0 | response | - | 50/200 | 2.79 | 4.86e-12 | - | yes |
| KW | 0 | fungal | - | 11/200 | 13.96 | 2.73e-11 | - | no |
| KW | 0 | peroxidase | - | 10/200 | 14.09 | 1.54e-10 | - | no |
| KW | 0 | electron | - | 18/200 | 5.06 | 3.88e-09 | - | no |
| KW | 0 | stress | - | 20/200 | 4.26 | 1.23e-08 | - | no |
| KW | 0 | bacterial | - | 11/200 | 7.29 | 4.59e-08 | - | no |
| KW | 0 | carrier | - | 17/200 | 4.24 | 1.38e-07 | - | no |
| KW | 0 | membrane | - | 52/200 | 1.95 | 4.80e-07 | - | no |
| KW | 0 | signaling | - | 15/200 | 4.03 | 1.23e-06 | - | no |
| KW | 0 | major | - | 12/200 | 4.20 | 6.88e-06 | - | no |
| KW | 0 | plasma | - | 25/200 | 2.18 | 8.36e-05 | - | no |
| KW | 0 | related | - | 47/200 | 1.67 | 1.12e-04 | - | no |
| KW | 0 | transmembrane | - | 18/200 | 2.48 | 1.36e-04 | - | no |
| KW | 0 | vacuole | - | 10/200 | 3.17 | 3.60e-04 | - | no |
| KW | 0 | putative | - | 39/200 | 1.69 | 3.64e-04 | - | no |
| KW | 0 | transport | - | 20/200 | 2.06 | 7.94e-04 | - | no |
| KW | 0 | kinase | - | 21/200 | 1.99 | 9.37e-04 | - | no |
| KW | 0 | class | - | 14/200 | 2.34 | 1.08e-03 | - | no |
| KW | 0 | stimulus | - | 11/200 | 2.55 | 1.41e-03 | - | yes |
| KW | 0 | active | - | 17/200 | 2.08 | 1.53e-03 | - | no |
| KW | 0 | development | - | 15/200 | 2.15 | 1.84e-03 | 2.18E-15 | no |
| KW | 0 | conserved | - | 24/200 | 1.77 | 2.27e-03 | - | no |
| KW | 0 | ipr017442 | - | 12/200 | 2.28 | 2.62e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| KW | 0 | signal | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | region | - | 24/200 | 1.66 | 5.24e-03 | - | no |
| KW | 0 | terminal | - | 30/200 | 1.56 | 5.56e-03 | - | no |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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