AT3G21900.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u322190001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G12410.1 | 0.868706 | 3'-5' exonuclease/ nucleic acid binding | - | - | - | - |
| AT5G07490.1 | 0.862779 | unknown protein | - | - | - | - |
| AT5G58880.1 | 0.858097 | unknown protein | - | - | - | - |
| AT5G16100.1 | 0.852185 | unknown protein | - | - | - | - |
| AT1G04670.1 | 0.851556 | unknown protein | - | - | - | - |
| AT1G57550.1 | 0.84997 | hydrophobic protein, putative / low temperature and salt responsive protein, putative | - | - | - | - |
| AT4G13790.1 | 0.847734 | auxin-responsive protein, putative | OMAT4P103030 | - | - | - |
| AT5G39650.1 | 0.84585 | unknown protein | - | - | - | - |
| AT3G52620.1 | 0.844117 | unknown protein | - | - | - | - |
| AT5G57690.1 | 0.842098 | diacylglycerol kinase | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G02650.1 | -0.664967 | unknown protein | - | - | - | - |
| AT3G09405.1 | -0.657751 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G22360.1 | -0.631742 | ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) | OMAT5P106490 | - | - | - |
| AT3G25510.1 | -0.620908 | disease resistance protein (TIR-NBS-LRR class), putative | - | - | - | - |
| AT5G46295.1 | -0.617254 | unknown protein | - | - | - | - |
| ath-MIR172e | -0.614571 | ath-MIR172e | - | - | - | - |
| AT5G59505.1 | -0.614571 | MIR172E | - | - | - | - |
| AT1G33670.1 | -0.614068 | leucine-rich repeat family protein | - | - | - | - |
| AT1G02930.1 | -0.607112 | ATGSTF6 (GLUTATHIONE S-TRANSFERASE) | OMAT1P100625 | - | - | - |
| AT5G25020.1 | -0.596228 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.47e-11 | :20 terms with high significance | |
| 3.47e-11 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0009856 | pollination | 10/200 | 10.66 | 3.07e-09 | - | no |
| B | 3 | GO:0032989 | cellular component morphogenesis | 11/200 | 6.58 | 1.39e-07 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 13/200 | 4.68 | 9.25e-07 | - | no |
| B | 4 | GO:0030154 | cell differentiation | 10/200 | 5.30 | 3.56e-06 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 13/200 | 3.87 | 8.31e-06 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 15/200 | 3.45 | 8.83e-06 | - | no |
| B | 3 | GO:0006810 | transport | 23/200 | 2.24 | 9.87e-05 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 23/200 | 2.24 | 1.03e-04 | - | no |
| B | 3 | GO:0022414 | reproductive process | 14/200 | 2.32 | 1.15e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 12/200 | 2.18 | 3.82e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 17/200 | 1.90 | 3.97e-03 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 13/200 | 1.96 | 7.20e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 13/200 | 1.96 | 7.26e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 68/200 | 2.80 | 1.61e-16 | - | yes |
| C | 3 | GO:0044464 | cell part | 130/200 | 1.42 | 1.34e-08 | - | yes |
| C | 3 | GO:0044425 | membrane part | 23/200 | 2.91 | 1.43e-06 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 16/200 | 2.98 | 3.11e-05 | - | no |
| C | 3 | GO:0016020 | membrane | 39/200 | 1.42 | 8.38e-03 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 17/200 | 8.49 | 2.32e-12 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 25/200 | 4.21 | 3.20e-10 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 35/200 | 2.24 | 2.06e-06 | - | no |
| M | 4 | GO:0022804 | active transmembrane transporter activity | 11/200 | 3.24 | 1.72e-04 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 13/200 | 2.31 | 1.65e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 13/200 | 2.09 | 4.05e-03 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 10/200 | 2.27 | 5.06e-03 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 104/200 | 3.57 | 1.88e-36 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 127/200 | 1.53 | 1.01e-10 | - | no |
| PS | 5 | PO:0009046 | flower | 139/200 | 1.34 | 1.60e-07 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 139/200 | 1.33 | 2.53e-07 | - | no |
| PS | 3 | PO:0009032 | petal | 122/200 | 1.39 | 3.50e-07 | - | no |
| PS | 3 | PO:0009006 | shoot | 139/200 | 1.28 | 3.79e-06 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 124/200 | 1.31 | 8.64e-06 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 124/200 | 1.31 | 8.64e-06 | - | no |
| PS | 3 | PO:0009031 | sepal | 119/200 | 1.29 | 5.77e-05 | - | no |
| PS | 3 | PO:0006001 | phyllome | 126/200 | 1.23 | 3.15e-04 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 106/200 | 3.62 | 6.63e-38 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 142/200 | 1.39 | 2.34e-09 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 137/200 | 1.41 | 3.18e-09 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 142/200 | 1.36 | 2.39e-08 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 125/200 | 1.27 | 6.80e-05 | - | no |
| KW | 0 | pollen | - | 105/200 | 11.76 | 2.20e-88 | - | no |
| KW | 0 | germinated | - | 88/200 | 15.90 | 4.94e-84 | - | no |
| KW | 0 | anthesis | - | 115/200 | 8.75 | 1.23e-83 | - | no |
| KW | 0 | mature | - | 93/200 | 10.40 | 5.49e-72 | - | no |
| KW | 0 | stage | - | 121/200 | 6.25 | 8.18e-72 | - | no |
| KW | 0 | petal | - | 103/200 | 7.06 | 5.49e-64 | - | no |
| KW | 0 | expansion | - | 103/200 | 7.01 | 1.14e-63 | - | no |
| KW | 0 | differentiation | - | 104/200 | 6.88 | 1.32e-63 | - | no |
| KW | 0 | globular | - | 44/200 | 11.72 | 3.85e-35 | - | no |
| KW | 0 | system | - | 70/200 | 2.89 | 8.73e-18 | - | yes |
| KW | 0 | endomembrane | - | 69/200 | 2.92 | 9.50e-18 | - | yes |
| KW | 0 | sepal | - | 20/200 | 9.26 | 6.66e-15 | - | no |
| KW | 0 | gametophyte | - | 23/200 | 5.86 | 1.81e-12 | - | no |
| KW | 0 | pectinesterase | - | 12/200 | 12.79 | 1.33e-11 | - | no |
| KW | 0 | whorl | - | 17/200 | 7.27 | 3.05e-11 | - | no |
| KW | 0 | flower | - | 30/200 | 3.93 | 3.47e-11 | - | no |
| KW | 0 | pectin | - | 13/200 | 8.58 | 4.85e-10 | - | no |
| KW | 0 | lipid | - | 18/200 | 5.24 | 2.16e-09 | - | no |
| KW | 0 | inhibitor | - | 13/200 | 4.35 | 2.17e-06 | - | no |
| KW | 0 | motif | - | 15/200 | 3.09 | 3.41e-05 | - | no |
| KW | 0 | member | - | 25/200 | 2.28 | 3.99e-05 | - | no |
| KW | 0 | acting | - | 10/200 | 3.71 | 9.34e-05 | - | no |
| KW | 0 | signaling | - | 10/200 | 2.69 | 1.40e-03 | - | no |
| KW | 0 | terminal | - | 32/200 | 1.66 | 1.57e-03 | - | no |
| KW | 0 | transport | - | 18/200 | 1.85 | 4.26e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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