AT3G58530.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u325853001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G05000.1 | 0.945473 | VPS28-2 | OMAT4P001670 | - | - | - |
| AT2G39170.1 | 0.935701 | unknown protein | OMAT2P109470 | - | - | - |
| AT5G10710.2 | 0.934246 | protein binding | OMAT5P003610 | - | - | - |
| AT1G51370.1 | 0.927971 | F-box family protein | OMAT1P014160 | - | - | - |
| AT3G56720.1 | 0.927306 | unknown protein | OMAT3P015820 | - | - | - |
| AT4G02880.1 | 0.926644 | unknown protein | OMAT4P001100 | - | - | - |
| AT2G43210.1 | 0.926438 | UBX domain-containing protein | OMAT2P011860 | - | - | - |
| AT3G12250.4 | 0.923676 | TGA6 (TGACG MOTIF-BINDING FACTOR 6) | OMAT3P004280 | - | - | - |
| AT1G17640.1 | 0.921041 | RNA recognition motif (RRM)-containing protein | OMAT1P105700 | - | - | - |
| AT4G33060.1 | 0.920523 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | OMAT4P011160 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G74640.1 | -0.853682 | unknown protein | OMAT1P021720 | - | - | - |
| AT5G02380.1 | -0.813304 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT1G66200.1 | -0.807199 | ATGSR2 | OMAT1P116390 | - | - | - |
| AT2G38170.3 | -0.787252 | CAX1 (cation exchanger 1) | OMAT2P109050,OMAT2P109060 | [OMAT2P109050]-, [OMAT2P109060]- | - | - |
| AT4G37680.1 | -0.783193 | HHP4 (heptahelical protein 4) | - | - | - | - |
| AT2G07715.1 | -0.781559 | ribosomal protein L2, putative | - | - | - | - |
| AT3G59870.1 | -0.781401 | unknown protein | OMAT3P114830 | - | - | - |
| AT3G45980.1 | -0.780134 | HTB9 | OMAT3P110320 | - | - | - |
| AT1G60950.1 | -0.776239 | FED A | OMAT1P016540 | - | OMAT1P114790 | - |
| AT5G16390.1 | -0.7744 | CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) | OMAT5P104670 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 6.00e-20 | :20 terms with high significance | |
| 6.00e-20 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 33/200 | 1.96 | 6.70e-05 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 30/200 | 2.00 | 9.62e-05 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 23/200 | 2.13 | 2.21e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 21/200 | 2.13 | 3.76e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 22/200 | 2.09 | 3.77e-04 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 22/200 | 2.06 | 4.44e-04 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 21/200 | 2.09 | 4.76e-04 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 21/200 | 2.07 | 5.45e-04 | - | no |
| B | 5 | GO:0006350 | transcription | 21/200 | 2.06 | 6.04e-04 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 22/200 | 2.01 | 6.41e-04 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 23/200 | 1.95 | 7.47e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 33/200 | 1.70 | 9.30e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 33/200 | 1.66 | 1.30e-03 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 26/200 | 1.70 | 2.75e-03 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 16/200 | 1.88 | 5.39e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 11/200 | 2.10 | 6.63e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 86/200 | 1.62 | 1.78e-07 | - | no |
| C | 3 | GO:0044424 | intracellular part | 82/200 | 1.61 | 5.16e-07 | - | no |
| C | 5 | GO:0005634 | nucleus | 34/200 | 2.17 | 5.61e-06 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 69/200 | 1.57 | 1.61e-05 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 69/200 | 1.57 | 1.62e-05 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 70/200 | 1.52 | 4.65e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 58/200 | 1.55 | 1.44e-04 | - | no |
| C | 3 | GO:0043234 | protein complex | 16/200 | 2.45 | 3.35e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 52/200 | 1.50 | 7.76e-04 | - | no |
| C | 5 | GO:0009536 | plastid | 31/200 | 1.68 | 1.54e-03 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 53/200 | 2.23 | 3.90e-09 | - | no |
| M | 3 | GO:0005515 | protein binding | 33/200 | 2.11 | 1.46e-05 | 2.00E-06 | no |
| M | 4 | GO:0003677 | DNA binding | 28/200 | 2.02 | 1.28e-04 | 2.00E-06 | no |
| M | 3 | GO:0003700 | transcription factor activity | 19/200 | 1.88 | 2.88e-03 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 150/200 | 1.93 | 4.50e-26 | - | yes |
| PS | 4 | PO:0009047 | stem | 156/200 | 1.85 | 8.23e-26 | - | yes |
| PS | 3 | PO:0009013 | meristem | 150/200 | 1.87 | 2.57e-24 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 149/200 | 1.83 | 4.75e-23 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 151/200 | 1.80 | 1.07e-22 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 143/200 | 1.85 | 8.54e-22 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 148/200 | 1.78 | 2.00e-21 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 148/200 | 1.76 | 7.09e-21 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 150/200 | 1.74 | 8.03e-21 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 146/200 | 1.77 | 1.68e-20 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 136/200 | 1.85 | 6.00e-20 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 152/200 | 1.69 | 8.84e-20 | - | yes |
| PS | 5 | PO:0008037 | seedling | 150/200 | 1.70 | 1.49e-19 | - | yes |
| PS | 3 | PO:0009031 | sepal | 153/200 | 1.66 | 4.48e-19 | - | yes |
| PS | 5 | PO:0020038 | petiole | 137/200 | 1.80 | 6.28e-19 | - | yes |
| PS | 3 | PO:0009032 | petal | 148/200 | 1.69 | 1.00e-18 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 154/200 | 1.63 | 1.26e-18 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 154/200 | 1.63 | 1.26e-18 | - | yes |
| PS | 3 | PO:0009005 | root | 150/200 | 1.67 | 1.32e-18 | - | yes |
| PS | 4 | PO:0009025 | leaf | 150/200 | 1.63 | 1.47e-17 | - | yes |
| PS | 4 | PO:0009009 | embryo | 153/200 | 1.58 | 7.63e-17 | - | yes |
| PS | 3 | PO:0009010 | seed | 154/200 | 1.57 | 8.56e-17 | - | yes |
| PS | 4 | PO:0009001 | fruit | 154/200 | 1.57 | 1.54e-16 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 154/200 | 1.57 | 1.54e-16 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 78/200 | 2.40 | 2.43e-15 | - | no |
| PS | 3 | PO:0020097 | generative cell | 78/200 | 2.40 | 2.43e-15 | - | no |
| PS | 3 | PO:0006001 | phyllome | 155/200 | 1.51 | 4.83e-15 | - | yes |
| PS | 5 | PO:0009046 | flower | 155/200 | 1.49 | 2.37e-14 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 155/200 | 1.48 | 4.56e-14 | - | yes |
| PS | 3 | PO:0009006 | shoot | 156/200 | 1.44 | 7.63e-13 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 56/200 | 1.92 | 2.68e-07 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 150/200 | 1.83 | 3.13e-23 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 147/200 | 1.85 | 7.20e-23 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 149/200 | 1.81 | 2.17e-22 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 149/200 | 1.80 | 5.25e-22 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 150/200 | 1.78 | 5.82e-22 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 150/200 | 1.78 | 5.97e-22 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 150/200 | 1.77 | 1.32e-21 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 142/200 | 1.85 | 2.17e-21 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 142/200 | 1.85 | 2.30e-21 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 160/200 | 1.57 | 3.31e-18 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 154/200 | 1.59 | 3.14e-17 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 155/200 | 1.57 | 6.58e-17 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 160/200 | 1.53 | 9.32e-17 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 65/200 | 2.22 | 4.86e-11 | - | no |
| KW | 0 | interacting | - | 12/200 | 6.79 | 3.13e-08 | - | no |
| KW | 0 | biological_process | - | 93/200 | 1.56 | 2.45e-07 | - | yes |
| KW | 0 | motif | - | 16/200 | 3.29 | 8.86e-06 | - | no |
| KW | 0 | nucleic | - | 19/200 | 2.91 | 1.01e-05 | - | no |
| KW | 0 | nucleus | - | 29/200 | 2.25 | 1.40e-05 | - | no |
| KW | 0 | complex | - | 22/200 | 2.60 | 1.46e-05 | - | no |
| KW | 0 | nuclear | - | 12/200 | 3.90 | 1.49e-05 | - | no |
| KW | 0 | cyclin | - | 14/200 | 3.00 | 7.98e-05 | 1.00E-18 | no |
| KW | 0 | transcription | - | 29/200 | 2.00 | 1.23e-04 | - | no |
| KW | 0 | finger | - | 21/200 | 2.27 | 1.58e-04 | - | no |
| KW | 0 | ipr001810 | - | 12/200 | 2.95 | 2.49e-04 | - | no |
| KW | 0 | cytoplasm | - | 10/200 | 3.23 | 3.11e-04 | - | no |
| KW | 0 | ipr013083 | - | 10/200 | 3.19 | 3.43e-04 | - | no |
| KW | 0 | cellular_component | - | 69/200 | 1.42 | 4.70e-04 | - | yes |
| KW | 0 | factor | - | 31/200 | 1.77 | 6.35e-04 | - | no |
| KW | 0 | chloroplast | - | 30/200 | 1.70 | 1.50e-03 | - | no |
| KW | 0 | leucine | - | 12/200 | 2.29 | 2.55e-03 | 6.00E-66 | yes |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | containing | - | 27/200 | 1.62 | 4.73e-03 | 6.00E-66 | yes |
| KW | 0 | ubiquitin | - | 10/200 | 2.23 | 5.81e-03 | - | no |
| KW | 0 | regulation | - | 22/200 | 1.66 | 6.91e-03 | - | no |
| KW | 0 | subunit | - | 14/200 | 1.91 | 7.15e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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