Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G03545.1	0.91809	unknown protein	OMAT5P001020	-	-	-
AT5G13050.1	0.915454	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	OMAT5P103600	-	-	-
AT2G33630.1	0.905129	3-beta hydroxysteroid dehydrogenase/isomerase family protein	OMAT2P107340	-	-	-
AT4G35830.1	0.904072	aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)	OMAT4P110630	-	-	-
AT1G77145.1	0.896447	unknown protein	OMAT1P120160	-	-	-
AT5G16520.1	0.896321	unknown protein	-	-	-	-
AT3G47000.1	0.891081	glycosyl hydrolase family 3 protein	OMAT3P110680	-	-	-
AT3G55480.2	0.88741	adaptin family protein	OMAT3P113480	-	-	-
AT5G34850.1	0.886296	PAP26 (PURPLE ACID PHOSPHATASE 26)	OMAT5P108500,OMAT5P108510	[OMAT5P108500]-, [OMAT5P108510]-	OMAT5P009655,OMAT5P009660	[OMAT5P009655]-, [OMAT5P009660]-
AT3G13040.1	0.883347	myb family transcription factor	OMAT3P104300	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT3G42203.1	-0.849079	transposable element gene	-	-	-	-
AT3G54060.1	-0.845285	unknown protein	-	-	-	-
AT5G25860.1	-0.840836	F-box family protein	-	-	-	-
AT3G02600.1	-0.83379	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	OMAT3P000727,OMAT3P000730	[OMAT3P000727]-, [OMAT3P000730]-	-	-
AT2G38670.1	-0.826192	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	OMAT2P010140	-	-	-
AT5G67050.1	-0.812042	lipase class 3 family protein	-	-	-	-
AT4G32342.1	-0.806704	unknown protein	-	-	-	-
AT3G07440.1	-0.804614	unknown protein	-	-	-	-
AT3G44264.1	-0.804236	transposable element gene	-	-	-	-
AT4G06527.1	-0.803451	transposable element gene	-	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 6.01e-25	:20 terms with high significance
6.01e-25 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	3	GO:0042221	response to chemical stimulus	31/200	2.72	1.23e-07	-	yes
B	4	GO:0009617	response to bacterium	10/200	6.47	5.09e-07	-	no
B	5	GO:0009651	response to salt stress	12/200	5.22	6.32e-07	4.36E-18	yes
B	3	GO:0051707	response to other organism	14/200	4.18	1.63e-06	-	no
B	4	GO:0006970	response to osmotic stress	12/200	4.78	1.68e-06	6.38E-18	yes
B	3	GO:0009607	response to biotic stimulus	14/200	3.87	4.09e-06	-	no
B	3	GO:0009628	response to abiotic stimulus	20/200	2.70	1.89e-05	-	yes
B	3	GO:0006950	response to stress	27/200	2.18	4.71e-05	2.13E-16	yes
B	5	GO:0006796	phosphate metabolic process	17/200	2.56	1.33e-04	-	no
B	4	GO:0006793	phosphorus metabolic process	17/200	2.56	1.35e-04	-	no
B	4	GO:0010035	response to inorganic substance	10/200	3.51	1.53e-04	-	no
B	3	GO:0050794	regulation of cellular process	29/200	1.90	2.88e-04	7.80E-13	no
B	3	GO:0050789	regulation of biological process	31/200	1.79	5.19e-04	-	no
B	3	GO:0006810	transport	21/200	2.05	6.37e-04	8.46E-16	yes
B	3	GO:0051234	establishment of localization	21/200	2.04	6.62e-04	-	yes
B	3	GO:0044238	primary metabolic process	69/200	1.39	7.71e-04	-	no
B	5	GO:0010556	regulation of macromolecule biosynthetic process	20/200	2.03	9.27e-04	-	no
B	5	GO:0006508	proteolysis	11/200	2.62	1.12e-03	-	no
B	4	GO:0009889	regulation of biosynthetic process	20/200	1.99	1.18e-03	-	no
B	5	GO:0031326	regulation of cellular biosynthetic process	20/200	1.99	1.18e-03	-	no
B	4	GO:0010033	response to organic substance	15/200	2.24	1.19e-03	-	no
B	4	GO:0031323	regulation of cellular metabolic process	21/200	1.94	1.28e-03	-	no
B	3	GO:0006807	nitrogen compound metabolic process	33/200	1.66	1.30e-03	-	no
B	4	GO:0080090	regulation of primary metabolic process	20/200	1.90	2.10e-03	-	no
B	5	GO:0010468	regulation of gene expression	20/200	1.88	2.41e-03	1.01E-15	no
B	5	GO:0019219	regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	19/200	1.90	2.66e-03	-	no
B	4	GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	28/200	1.66	2.92e-03	-	no
B	4	GO:0051171	regulation of nitrogen compound metabolic process	19/200	1.88	2.98e-03	-	no
B	5	GO:0006350	transcription	19/200	1.86	3.25e-03	1.02E-15	no
B	4	GO:0060255	regulation of macromolecule metabolic process	20/200	1.83	3.30e-03	-	no
B	4	GO:0034641	cellular nitrogen compound metabolic process	31/200	1.59	3.46e-03	-	no
B	3	GO:0019222	regulation of metabolic process	21/200	1.78	3.63e-03	-	no
B	5	GO:0006464	protein modification process	19/200	1.83	4.05e-03	7.80E-13	no
B	3	GO:0044237	cellular metabolic process	63/200	1.33	4.17e-03	-	no
B	3	GO:0051716	cellular response to stimulus	10/200	2.26	5.16e-03	6.22E-18	no
B	4	GO:0006952	defense response	10/200	2.20	6.39e-03	-	no
B	3	GO:0043170	macromolecule metabolic process	52/200	1.34	8.23e-03	-	no

C	4	GO:0005886	plasma membrane	38/200	3.07	1.51e-10	0	yes
C	5	GO:0005773	vacuole	17/200	4.92	1.45e-08	2.71E-18	yes
C	4	GO:0043231	intracellular membrane-bounded organelle	78/200	1.78	1.55e-08	-	yes
C	3	GO:0043227	membrane-bounded organelle	78/200	1.78	1.56e-08	-	yes
C	3	GO:0043229	intracellular organelle	79/200	1.71	6.57e-08	7.80E-13	yes
C	3	GO:0044424	intracellular part	84/200	1.65	1.10e-07	7.80E-13	yes
C	3	GO:0005622	intracellular	86/200	1.62	1.78e-07	8.12E-16	yes
C	4	GO:0005737	cytoplasm	65/200	1.74	9.99e-07	2.55E-16	yes
C	4	GO:0044444	cytoplasmic part	61/200	1.76	1.63e-06	-	yes
C	3	GO:0044464	cell part	120/200	1.31	1.86e-05	-	yes
C	3	GO:0016020	membrane	48/200	1.75	2.87e-05	0	yes
C	5	GO:0009536	plastid	29/200	1.57	5.56e-03	3.64E-21	yes
C	5	GO:0005634	nucleus	25/200	1.60	7.34e-03	3.64E-21	no

M	3	GO:0022892	substrate-specific transporter activity	18/200	3.48	1.24e-06	-	yes
M	4	GO:0022891	substrate-specific transmembrane transporter activity	16/200	3.63	2.46e-06	-	yes
M	3	GO:0022857	transmembrane transporter activity	17/200	3.03	1.56e-05	-	yes
M	3	GO:0003700	transcription factor activity	20/200	1.98	1.26e-03	-	no
M	4	GO:0016772	transferase activity, transferring phosphorus-containing groups	18/200	1.96	2.24e-03	-	no
M	5	GO:0016301	kinase activity	16/200	1.99	3.12e-03	-	no
M	3	GO:0016740	transferase activity	27/200	1.65	3.63e-03	7.80E-13	no

PS	4	PO:0020030	cotyledon	158/200	2.15	2.64e-35	7.80E-13	yes
PS	4	PO:0009047	stem	166/200	1.97	1.62e-33	7.80E-13	yes
PS	5	PO:0009028	microsporophyll	161/200	1.92	7.66e-30	-	yes
PS	5	PO:0008037	seedling	163/200	1.85	2.42e-28	3.52E-13	yes
PS	4	PO:0009026	sporophyll	164/200	1.82	6.07e-28	-	yes
PS	4	PO:0000230	inflorescence meristem	152/200	1.96	1.78e-27	7.80E-13	yes
PS	4	PO:0009025	leaf	165/200	1.79	2.02e-27	4.19E-17	yes
PS	5	PO:0000013	cauline leaf	151/200	1.95	4.47e-27	-	yes
PS	3	PO:0009013	meristem	153/200	1.90	2.29e-26	7.80E-13	yes
PS	3	PO:0009005	root	161/200	1.79	9.86e-26	1.43E-16	yes
PS	5	PO:0009027	megasporophyll	155/200	1.85	2.25e-25	-	yes
PS	5	PO:0008034	leaf whorl	164/200	1.74	3.49e-25	-	yes
PS	4	PO:0008033	phyllome whorl	164/200	1.74	3.49e-25	-	yes
PS	5	PO:0020039	leaf lamina	153/200	1.86	5.41e-25	-	yes
PS	3	PO:0009031	sepal	162/200	1.75	6.01e-25	-	yes
PS	5	PO:0020038	petiole	146/200	1.92	2.00e-24	-	yes
PS	3	PO:0020091	male gametophyte	152/200	1.83	5.39e-24	-	yes
PS	4	PO:0009009	embryo	164/200	1.70	9.14e-24	3.52E-13	yes
PS	3	PO:0006001	phyllome	168/200	1.64	4.24e-23	-	yes
PS	3	PO:0009032	petal	155/200	1.77	4.67e-23	-	yes
PS	3	PO:0009010	seed	164/200	1.68	4.79e-23	3.52E-13	yes
PS	4	PO:0009001	fruit	164/200	1.67	9.55e-23	-	yes
PS	3	PO:0006342	infructescence	164/200	1.67	9.55e-23	-	yes
PS	4	PO:0000037	shoot apex	152/200	1.77	4.48e-22	-	yes
PS	5	PO:0009046	flower	166/200	1.60	7.21e-21	1.14E-17	yes
PS	5	PO:0009052	pedicel	145/200	1.78	1.47e-20	-	yes
PS	4	PO:0009049	inflorescence	166/200	1.59	1.59e-20	7.80E-13	yes
PS	3	PO:0009006	shoot	169/200	1.56	2.07e-20	7.80E-13	yes
PS	4	PO:0006345	pollen tube	48/200	1.65	1.38e-04	1.60E-18	no
PS	4	PO:0005679	epidermis	23/200	1.86	1.48e-03	7.47E-17	no
PS	3	PO:0009014	dermal tissue	23/200	1.86	1.49e-03	-	no
PS	5	PO:0006016	leaf epidermis	21/200	1.89	1.81e-03	1.19E-18	no
PS	5	PO:0006035	shoot epidermis	21/200	1.88	1.98e-03	-	no
PS	5	PO:0000349	epidermal initial	21/200	1.86	2.15e-03	-	no
PS	4	PO:0004011	initial cell	21/200	1.85	2.33e-03	7.80E-13	no
PS	3	PO:0004010	meristematic cell	21/200	1.85	2.37e-03	7.80E-13	no
PS	3	PO:0004013	epidermal cell	21/200	1.76	4.21e-03	1.60E-16	no
PS	4	PO:0000293	guard cell	19/200	1.77	5.80e-03	2.21E-18	no
PS	4	PO:0000351	guard mother cell	19/200	1.76	6.08e-03	-	no
PS	3	PO:0000070	meristemoid	19/200	1.76	6.19e-03	-	no

PG	5	PO:0007133	leaf production	161/200	1.91	1.17e-29	-	yes
PG	4	PO:0007112	1 main shoot growth	161/200	1.91	1.21e-29	-	yes
PG	3	PO:0007134	A vegetative growth	161/200	1.90	3.05e-29	3.66E-10	yes
PG	4	PO:0001054	4 leaf senescence stage	150/200	1.95	1.32e-26	-	yes
PG	3	PO:0001050	leaf development stages	150/200	1.95	1.41e-26	-	yes
PG	4	PO:0007616	4 anthesis	165/200	1.70	2.89e-24	3.66E-10	yes
PG	5	PO:0007604	corolla developmental stages	162/200	1.64	3.51e-21	-	yes
PG	5	PO:0001081	F mature embryo stage	143/200	1.80	2.11e-20	-	yes
PG	5	PO:0001185	C globular stage	145/200	1.77	4.03e-20	-	yes
PG	5	PO:0004507	D bilateral stage	145/200	1.76	6.16e-20	-	yes
PG	3	PO:0007615	flower development stages	165/200	1.58	7.99e-20	-	yes
PG	4	PO:0007600	3 floral organ development stages	162/200	1.59	1.93e-19	-	yes
PG	5	PO:0001078	E expanded cotyledon stage	143/200	1.72	2.00e-18	-	yes
PG	4	PO:0007631	embryo development stages	148/200	1.64	1.96e-17	-	yes
PG	3	PO:0001170	seed development stages	148/200	1.64	3.14e-17	7.80E-13	yes
PG	5	PO:0007605	androecium developmental stages	48/200	1.64	1.56e-04	-	no

KW	0	plasma	-	35/200	3.05	9.25e-10	0	yes
KW	0	response	-	43/200	2.40	1.88e-08	3.49E-15	yes
KW	0	major	-	15/200	5.25	3.57e-08	7.00E-102	yes
KW	0	channel	-	10/200	7.66	9.36e-08	1.43E-30	yes
KW	0	vacuole	-	15/200	4.76	1.36e-07	2.71E-18	yes
KW	0	membrane	-	48/200	1.80	1.35e-05	0	yes
KW	0	stress	-	15/200	3.20	2.23e-05	7.86E-16	yes
KW	0	serine	-	21/200	2.36	9.29e-05	3.52E-16	no
KW	0	encodes	-	44/200	1.72	9.54e-05	1.59E-16	no
KW	0	mediated	-	11/200	3.11	2.52e-04	1.52E-15	no
KW	0	transport	-	21/200	2.16	3.18e-04	8.46E-16	yes
KW	0	class	-	14/200	2.34	1.08e-03	-	no
KW	0	ipr008271	-	12/200	2.46	1.35e-03	-	no
KW	0	ipr017441	-	11/200	2.56	1.37e-03	-	no
KW	0	signaling	-	10/200	2.69	1.40e-03	7.06E-16	no
KW	0	regulation	-	24/200	1.82	1.65e-03	1.97E-15	no
KW	0	process	-	33/200	1.61	2.21e-03	3.52E-13	no
KW	0	amino	-	17/200	1.97	2.66e-03	1.80E-15	no
KW	0	active	-	16/200	1.95	3.70e-03	1.35E-15	no
KW	0	threonine	-	15/200	2.00	3.73e-03	-	no
KW	0	ipr000719	-	13/200	2.09	4.19e-03	-	no
KW	0	transporter	-	14/200	2.01	4.46e-03	1.55E-16	no
KW	0	transcription	-	24/200	1.65	5.60e-03	1.02E-15	no
KW	0	ipr011009	-	13/200	2.01	5.76e-03	-	no
KW	0	ubiquitin	-	10/200	2.23	5.81e-03	7.67E-17	no
KW	0	phosphorylation	-	12/200	1.95	9.24e-03	5.50E-16	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

Top Page

label http://www.w3.org/2000/01/rdf-schema#label