AT4G04750.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u420475001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G34980.1 | 0.913878 | SLP2 | OMAT4P110270 | - | - | - |
| AT1G27370.1 | 0.913162 | squamosa promoter-binding protein-like 10 (SPL10) | OMAT1P108550 | - | - | - |
| AT5G40140.1 | 0.913036 | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | OMAT5P010870 | - | - | - |
| AT1G77110.1 | 0.912621 | PIN6 (PIN-FORMED 6) | OMAT1P022710 | - | - | - |
| AT4G31650.1 | 0.907965 | transcriptional factor B3 family protein | OMAT4P010530 | - | - | - |
| AT2G38120.1 | 0.907807 | AUX1 (AUXIN RESISTANT 1) | OMAT2P009910 | - | - | - |
| AT2G47160.2 | 0.901881 | BOR1 (REQUIRES HIGH BORON 1) | OMAT2P112270 | - | - | - |
| AT2G32400.1 | 0.901707 | GLR5 (GLUTAMATE RECEPTOR 5) | OMAT2P106950 | - | - | - |
| AT3G59570.1 | 0.89918 | RabGAP/TBC domain-containing protein | - | - | - | - |
| AT4G00340.1 | 0.890709 | RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4) | OMAT4P000120 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G07516.1 | -0.790635 | transposable element gene | - | - | - | - |
| AT1G55060.1 | -0.782831 | UBQ12 (UBIQUITIN 12) | - | - | - | - |
| AT2G14550.1 | -0.740112 | pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5 | - | - | - | - |
| AT2G05200.1 | -0.714809 | transposable element gene | - | - | - | - |
| AT4G08106.1 | -0.707313 | transposable element gene | - | - | - | - |
| AT1G35645.1 | -0.70525 | transposable element gene | - | - | - | - |
| AT3G06870.1 | -0.69156 | proline-rich family protein | - | - | OMAT3P002480 | - |
| AT3G29580.1 | -0.687421 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT2G24750.1 | -0.681958 | pseudogene, similar to Avr9/Cf-9 rapidly elicited protein 141, similar to GB:AAB61068 | - | - | - | - |
| AT1G62510.1 | -0.678612 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | OMAT1P115300 | - | OMAT1P017040 | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.89e-15 | :20 terms with high significance | |
| 1.89e-15 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0019222 | regulation of metabolic process | 32/200 | 2.72 | 7.81e-08 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 29/200 | 2.89 | 8.13e-08 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 29/200 | 2.86 | 1.01e-07 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 29/200 | 2.75 | 2.33e-07 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 29/200 | 2.72 | 3.00e-07 | - | no |
| B | 5 | GO:0006350 | transcription | 28/200 | 2.74 | 4.01e-07 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 29/200 | 2.68 | 4.08e-07 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 29/200 | 2.65 | 5.26e-07 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 26/200 | 2.64 | 2.08e-06 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 26/200 | 2.59 | 2.98e-06 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 26/200 | 2.59 | 2.98e-06 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 20/200 | 3.01 | 3.62e-06 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 20/200 | 3.01 | 3.67e-06 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 36/200 | 2.08 | 8.16e-06 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 26/200 | 2.45 | 8.27e-06 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 32/200 | 2.10 | 2.18e-05 | - | no |
| B | 3 | GO:0022414 | reproductive process | 17/200 | 2.82 | 3.91e-05 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 33/200 | 1.96 | 6.70e-05 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 30/200 | 2.00 | 9.62e-05 | - | no |
| B | 5 | GO:0006464 | protein modification process | 22/200 | 2.11 | 3.21e-04 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 15/200 | 2.53 | 3.26e-04 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 54/200 | 1.53 | 3.40e-04 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 11/200 | 2.95 | 4.12e-04 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 14/200 | 2.56 | 4.39e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 34/200 | 1.75 | 4.59e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 34/200 | 1.71 | 6.54e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 19/200 | 2.12 | 6.93e-04 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 13/200 | 2.49 | 8.39e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 22/200 | 1.94 | 1.03e-03 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 56/200 | 1.45 | 1.11e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 13/200 | 2.36 | 1.38e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 66/200 | 1.33 | 3.41e-03 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 63/200 | 1.33 | 4.17e-03 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 16/200 | 1.88 | 5.39e-03 | - | no |
| B | 4 | GO:0010467 | gene expression | 31/200 | 1.52 | 6.76e-03 | 1.29E-17 | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 32/200 | 1.48 | 8.82e-03 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 32/200 | 1.48 | 9.22e-03 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 33/200 | 2.66 | 7.93e-08 | - | no |
| C | 3 | GO:0044464 | cell part | 117/200 | 1.28 | 1.10e-04 | - | yes |
| C | 3 | GO:0016020 | membrane | 44/200 | 1.61 | 4.68e-04 | 1.00E-91 | yes |
| C | 5 | GO:0005634 | nucleus | 25/200 | 1.60 | 7.34e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 31/200 | 3.07 | 7.37e-09 | - | no |
| M | 4 | GO:0003677 | DNA binding | 33/200 | 2.38 | 1.04e-06 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 24/200 | 2.62 | 5.65e-06 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 18/200 | 2.90 | 1.69e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 21/200 | 2.61 | 2.05e-05 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 42/200 | 1.77 | 7.51e-05 | - | no |
| M | 3 | GO:0016740 | transferase activity | 31/200 | 1.90 | 1.92e-04 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 19/200 | 2.10 | 7.90e-04 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 19/200 | 2.10 | 7.90e-04 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 19/200 | 2.09 | 8.16e-04 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 19/200 | 1.83 | 3.93e-03 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 18/200 | 1.83 | 4.67e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 18/200 | 1.83 | 4.67e-03 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 10/200 | 2.27 | 5.06e-03 | - | yes |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 11/200 | 2.13 | 6.07e-03 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 140/200 | 1.80 | 9.86e-20 | - | yes |
| PS | 3 | PO:0009013 | meristem | 141/200 | 1.75 | 8.88e-19 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 142/200 | 1.72 | 3.50e-18 | - | yes |
| PS | 5 | PO:0008037 | seedling | 147/200 | 1.67 | 8.10e-18 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 139/200 | 1.71 | 3.82e-17 | - | yes |
| PS | 3 | PO:0009032 | petal | 145/200 | 1.65 | 4.84e-17 | - | yes |
| PS | 4 | PO:0009025 | leaf | 148/200 | 1.61 | 1.86e-16 | - | yes |
| PS | 3 | PO:0009005 | root | 146/200 | 1.62 | 2.24e-16 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 150/200 | 1.59 | 2.33e-16 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 150/200 | 1.59 | 2.33e-16 | - | yes |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | yes |
| PS | 4 | PO:0009009 | embryo | 151/200 | 1.56 | 9.44e-16 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 141/200 | 1.64 | 9.69e-16 | - | yes |
| PS | 3 | PO:0009010 | seed | 152/200 | 1.55 | 1.07e-15 | - | yes |
| PS | 4 | PO:0009001 | fruit | 152/200 | 1.55 | 1.89e-15 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 152/200 | 1.55 | 1.89e-15 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 155/200 | 1.51 | 4.83e-15 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 130/200 | 1.68 | 1.19e-14 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 135/200 | 1.61 | 8.67e-14 | - | yes |
| PS | 4 | PO:0009047 | stem | 135/200 | 1.60 | 1.34e-13 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 154/200 | 1.47 | 1.47e-13 | - | yes |
| PS | 5 | PO:0009046 | flower | 152/200 | 1.46 | 7.52e-13 | - | yes |
| PS | 3 | PO:0009006 | shoot | 156/200 | 1.44 | 7.63e-13 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 138/200 | 1.53 | 1.98e-12 | - | yes |
| PS | 5 | PO:0020038 | petiole | 121/200 | 1.59 | 3.91e-11 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 124/200 | 1.48 | 3.41e-09 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 108/200 | 1.47 | 2.14e-07 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 107/200 | 1.29 | 2.26e-04 | - | no |
| PS | 3 | PO:0000034 | vascular system | 10/200 | 3.06 | 4.84e-04 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 134/200 | 1.74 | 7.50e-17 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 134/200 | 1.74 | 7.91e-17 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 146/200 | 1.62 | 2.42e-16 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 146/200 | 1.61 | 3.81e-16 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 138/200 | 1.66 | 9.80e-16 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 136/200 | 1.66 | 3.35e-15 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 150/200 | 1.55 | 4.68e-15 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 151/200 | 1.53 | 9.54e-15 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 137/200 | 1.62 | 2.18e-14 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 136/200 | 1.62 | 3.45e-14 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 136/200 | 1.62 | 3.51e-14 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 152/200 | 1.49 | 8.43e-14 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 133/200 | 1.61 | 1.36e-13 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 130/200 | 1.63 | 1.58e-13 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 153/200 | 1.46 | 4.97e-13 | - | yes |
| KW | 0 | regulation | - | 37/200 | 2.80 | 3.38e-09 | - | no |
| KW | 0 | plasma | - | 33/200 | 2.88 | 1.21e-08 | - | no |
| KW | 0 | transcription | - | 35/200 | 2.41 | 3.76e-07 | - | no |
| KW | 0 | ipr000719 | - | 20/200 | 3.21 | 1.34e-06 | - | no |
| KW | 0 | amino | - | 24/200 | 2.79 | 1.88e-06 | - | no |
| KW | 0 | ipr011009 | - | 20/200 | 3.09 | 2.40e-06 | - | no |
| KW | 0 | phosphorylation | - | 19/200 | 3.09 | 4.11e-06 | - | no |
| KW | 0 | repeat | - | 30/200 | 2.31 | 5.86e-06 | - | no |
| KW | 0 | leucine | - | 17/200 | 3.24 | 6.30e-06 | - | no |
| KW | 0 | development | - | 20/200 | 2.87 | 7.70e-06 | - | no |
| KW | 0 | containing | - | 35/200 | 2.10 | 8.93e-06 | - | no |
| KW | 0 | threonine | - | 20/200 | 2.67 | 2.26e-05 | - | no |
| KW | 0 | factor | - | 35/200 | 2.00 | 2.57e-05 | - | no |
| KW | 0 | ipr001611 | - | 11/200 | 3.89 | 3.08e-05 | - | no |
| KW | 0 | ipr017441 | - | 14/200 | 3.26 | 3.09e-05 | - | no |
| KW | 0 | ipr008271 | - | 15/200 | 3.07 | 3.61e-05 | - | no |
| KW | 0 | membrane | - | 46/200 | 1.73 | 6.11e-05 | 1.00E-91 | yes |
| KW | 0 | ipr017442 | - | 15/200 | 2.85 | 8.79e-05 | - | no |
| KW | 0 | serine | - | 21/200 | 2.36 | 9.29e-05 | - | no |
| KW | 0 | kinase | - | 21/200 | 1.99 | 9.37e-04 | - | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | transmembrane | - | 16/200 | 2.20 | 1.06e-03 | 0 | yes |
| KW | 0 | dependent | - | 24/200 | 1.79 | 1.96e-03 | - | no |
| KW | 0 | nucleus | - | 23/200 | 1.78 | 2.53e-03 | - | no |
| KW | 0 | active | - | 16/200 | 1.95 | 3.70e-03 | - | no |
| KW | 0 | receptor | - | 10/200 | 2.10 | 8.73e-03 | 3.00E-46 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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