AT4G11030.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u421103001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G46650.1 | 0.975745 | zinc finger (C3HC4-type RING finger) family protein | - | - | - | - |
| AT1G04700.1 | 0.973209 | protein kinase family protein | OMAT1P001480 | - | - | - |
| AT2G13680.1 | 0.972825 | CALS5 (CALLOSE SYNTHASE 5) | OMAT2P001680 | - | - | - |
| AT1G56360.1 | 0.972678 | PAP6 (PURPLE ACID PHOSPHATASE 6) | OMAT1P114100 | - | - | - |
| AT5G60500.1 | 0.972096 | undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein | - | - | - | - |
| AT1G79860.1 | 0.972043 | ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) | OMAT1P121160 | - | - | - |
| AT1G06990.1 | 0.97128 | GDSL-motif lipase/hydrolase family protein | OMAT1P002250 | - | - | - |
| AT3G28820.1 | 0.970487 | unknown protein | - | - | - | - |
| AT1G24620.1 | 0.970251 | polcalcin, putative / calcium-binding pollen allergen, putative | OMAT1P107940 | - | - | - |
| AT1G26480.1 | 0.969444 | GRF12 (GENERAL REGULATORY FACTOR 12) | OMAT1P108270 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G33900.1 | -0.69164 | kelch repeat-containing F-box family protein | - | - | - | - |
| AT2G05750.1 | -0.643126 | transposable element gene | - | - | - | - |
| AT5G53230.1 | -0.637085 | unknown protein | - | - | - | - |
| AT5G66211.1 | -0.602353 | unknown protein | - | - | - | - |
| AT5G02650.1 | -0.599744 | unknown protein | - | - | - | - |
| AT5G54661.1 | -0.589833 | Pseudogene of AT5G54660 | - | - | - | - |
| AT2G33509.1 | -0.582173 | unknown protein | - | - | - | - |
| AT4G22800.1 | -0.575179 | unknown protein | - | - | - | - |
| AT5G42323.1 | -0.573387 | Pseudogene of AT1G06390 | - | - | - | - |
| AT3G66654.1 | -0.57259 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | OMAT3P002350 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.04e-15 | :20 terms with high significance | |
| 4.04e-15 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0010876 | lipid localization | 12/200 | 12.39 | 1.99e-11 | - | no |
| B | 3 | GO:0022414 | reproductive process | 20/200 | 3.32 | 7.90e-07 | - | no |
| B | 3 | GO:0032989 | cellular component morphogenesis | 10/200 | 5.98 | 1.10e-06 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 12/200 | 4.32 | 5.11e-06 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 17/200 | 3.26 | 5.64e-06 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 15/200 | 3.45 | 8.83e-06 | - | yes |
| B | 3 | GO:0033036 | macromolecule localization | 13/200 | 3.76 | 1.14e-05 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 16/200 | 2.90 | 4.33e-05 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 11/200 | 3.27 | 1.59e-04 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 23/200 | 2.17 | 1.69e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 20/200 | 2.23 | 2.68e-04 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 11/200 | 2.26 | 3.88e-03 | - | no |
| B | 3 | GO:0006810 | transport | 18/200 | 1.76 | 7.31e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 18/200 | 1.75 | 7.53e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 82/200 | 3.37 | 1.04e-25 | - | no |
| C | 3 | GO:0044464 | cell part | 137/200 | 1.50 | 2.34e-11 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 17/200 | 2.15 | 1.05e-03 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 16/200 | 7.99 | 2.38e-11 | - | no |
| M | 3 | GO:0008289 | lipid binding | 13/200 | 9.52 | 1.23e-10 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 42/200 | 2.69 | 9.37e-10 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 21/200 | 3.53 | 1.52e-07 | - | no |
| M | 4 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | 13/200 | 4.89 | 5.48e-07 | - | no |
| M | 5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 12/200 | 4.84 | 1.47e-06 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 79/200 | 2.71 | 1.17e-18 | - | no |
| PS | 5 | PO:0009046 | flower | 157/200 | 1.51 | 2.05e-15 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 157/200 | 1.50 | 4.04e-15 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 147/200 | 1.56 | 8.79e-15 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 147/200 | 1.56 | 8.79e-15 | - | yes |
| PS | 3 | PO:0009031 | sepal | 144/200 | 1.56 | 3.45e-14 | - | yes |
| PS | 3 | PO:0009006 | shoot | 158/200 | 1.46 | 7.44e-14 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 152/200 | 1.48 | 1.68e-13 | - | yes |
| PS | 3 | PO:0009032 | petal | 138/200 | 1.57 | 1.73e-13 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 111/200 | 1.34 | 2.30e-05 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 108/200 | 1.20 | 4.29e-03 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 80/200 | 2.73 | 4.00e-19 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 157/200 | 1.54 | 1.85e-16 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 157/200 | 1.50 | 4.40e-15 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 149/200 | 1.51 | 9.75e-14 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 145/200 | 1.50 | 1.34e-12 | - | yes |
| KW | 0 | petal | - | 124/200 | 8.50 | 2.94e-90 | - | yes |
| KW | 0 | anthesis | - | 119/200 | 9.06 | 5.71e-89 | - | yes |
| KW | 0 | expansion | - | 123/200 | 8.37 | 1.59e-88 | - | yes |
| KW | 0 | differentiation | - | 123/200 | 8.14 | 4.85e-87 | - | yes |
| KW | 0 | stage | - | 131/200 | 6.77 | 4.46e-84 | - | yes |
| KW | 0 | pollen | - | 81/200 | 9.08 | 4.77e-57 | - | no |
| KW | 0 | germinated | - | 64/200 | 11.57 | 6.15e-51 | - | no |
| KW | 0 | mature | - | 74/200 | 8.27 | 7.78e-49 | - | no |
| KW | 0 | sepal | - | 37/200 | 17.14 | 6.49e-36 | - | no |
| KW | 0 | globular | - | 44/200 | 11.72 | 3.85e-35 | - | no |
| KW | 0 | whorl | - | 36/200 | 15.39 | 3.03e-33 | - | no |
| KW | 0 | endomembrane | - | 83/200 | 3.51 | 2.95e-27 | - | no |
| KW | 0 | system | - | 83/200 | 3.43 | 1.63e-26 | - | no |
| KW | 0 | flower | - | 47/200 | 6.15 | 6.56e-25 | - | no |
| KW | 0 | storage | - | 15/200 | 13.20 | 4.24e-14 | - | no |
| KW | 0 | inhibitor | - | 22/200 | 7.36 | 4.72e-14 | - | no |
| KW | 0 | lipid | - | 22/200 | 6.41 | 8.39e-13 | - | no |
| KW | 0 | secreted | - | 11/200 | 16.33 | 4.19e-12 | - | no |
| KW | 0 | pectinesterase | - | 10/200 | 10.66 | 3.07e-09 | - | no |
| KW | 0 | pectin | - | 12/200 | 7.92 | 5.02e-09 | - | no |
| KW | 0 | hydrolase | - | 26/200 | 3.56 | 5.23e-09 | - | no |
| KW | 0 | lyase | - | 13/200 | 6.55 | 1.53e-08 | - | no |
| KW | 0 | allergen | - | 10/200 | 8.80 | 2.28e-08 | - | no |
| KW | 0 | glycoside | - | 14/200 | 5.31 | 7.82e-08 | - | no |
| KW | 0 | glycoprotein | - | 10/200 | 7.56 | 1.08e-07 | - | no |
| KW | 0 | metabolic | - | 31/200 | 2.70 | 1.45e-07 | - | no |
| KW | 0 | sequence | - | 16/200 | 4.21 | 3.27e-07 | - | no |
| KW | 0 | cysteine | - | 12/200 | 5.45 | 3.91e-07 | - | no |
| KW | 0 | expanded | - | 17/200 | 3.89 | 4.75e-07 | - | no |
| KW | 0 | gametophyte | - | 16/200 | 4.07 | 5.13e-07 | - | no |
| KW | 0 | member | - | 28/200 | 2.56 | 1.68e-06 | - | no |
| KW | 0 | process | - | 42/200 | 2.05 | 2.05e-06 | - | yes |
| KW | 0 | carbohydrate | - | 15/200 | 3.83 | 2.41e-06 | - | no |
| KW | 0 | locus | - | 11/200 | 4.58 | 6.10e-06 | - | no |
| KW | 0 | similarity | - | 11/200 | 4.57 | 6.25e-06 | - | no |
| KW | 0 | cotyledon | - | 17/200 | 3.23 | 6.50e-06 | - | no |
| KW | 0 | alpha | - | 20/200 | 2.74 | 1.50e-05 | - | no |
| KW | 0 | acting | - | 10/200 | 3.71 | 9.34e-05 | - | no |
| KW | 0 | specific | - | 11/200 | 3.22 | 1.84e-04 | - | no |
| KW | 0 | active | - | 19/200 | 2.32 | 2.24e-04 | - | no |
| KW | 0 | small | - | 12/200 | 2.98 | 2.28e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | - | no |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | 1.00E-12 | no |
| KW | 0 | subgroup | - | 11/200 | 2.71 | 8.53e-04 | - | no |
| KW | 0 | region | - | 26/200 | 1.80 | 1.27e-03 | - | no |
| KW | 0 | glycosyl | - | 11/200 | 2.58 | 1.30e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | - | yes |
| KW | 0 | phosphorylation | - | 13/200 | 2.12 | 3.72e-03 | - | no |
| KW | 0 | synthase | - | 10/200 | 2.28 | 4.91e-03 | 5.00E-25 | no |
| KW | 0 | catalytic | - | 18/200 | 1.77 | 6.72e-03 | - | yes |
| KW | 0 | transport | - | 17/200 | 1.75 | 9.14e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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