Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G48000.1	0.997395	CYP708A2	OMAT5P112150	-	-	-
AT4G11210.1	0.997093	disease resistance-responsive family protein / dirigent family protein	OMAT4P002780	-	-	-
AT3G29410.1	0.996978	terpene synthase/cyclase family protein	OMAT3P109580	-	-	-
AT5G44920.1	0.996129	Toll-Interleukin-Resistance (TIR) domain-containing protein	OMAT5P012530	-	-	-
AT5G38020.1	0.995978	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	OMAT5P109050	-	-	-
AT1G64590.1	0.995207	short-chain dehydrogenase/reductase (SDR) family protein	OMAT1P017820	-	-	-
AT1G14240.1	0.994254	nucleoside phosphatase family protein / GDA1/CD39 family protein	OMAT1P005030	-	-	-
AT1G45015.1	0.993936	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	OMAT1P012750	-	-	-
AT1G66800.1	0.993928	cinnamyl-alcohol dehydrogenase family / CAD family	OMAT1P018600	-	-	-
AT3G29430.1	0.993821	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	OMAT3P011030	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G54770.1	-0.708484	THI1	OMAT5P016150	-	OMAT5P114270	-
AT4G13880.1	-0.671663	AtRLP48 (Receptor Like Protein 48)	-	-	-	-
AT1G20750.1	-0.633825	helicase-related	-	-	-	-
AT3G18460.1	-0.628786	unknown protein	-	-	-	-
AT2G05610.1	-0.601764	transposable element gene	-	-	-	-
AT5G32598.1	-0.597386	transposable element gene	-	-	-	-
AT5G38365.1	-0.587179	transposable element gene	-	-	-	-
AT4G38225.3	-0.585795	unknown protein	OMAT4P013310	-	-	-
AT2G06780.1	-0.585266	transposable element gene	-	-	-	-
AT2G12190.1	-0.585192	cytochrome P450, putative	-	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 4.04e-09	:20 terms with high significance
4.04e-09 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	4	GO:0006952	defense response	16/200	3.51	3.78e-06	-	yes
B	3	GO:0019748	secondary metabolic process	11/200	4.75	4.25e-06	-	no
B	3	GO:0006950	response to stress	24/200	1.94	6.75e-04	-	yes

C	3	GO:0012505	endomembrane system	71/200	2.92	2.46e-18	-	no
C	3	GO:0044464	cell part	118/200	1.29	6.19e-05	-	no

M	4	GO:0020037	heme binding	17/200	9.71	2.39e-13	-	no
M	3	GO:0046906	tetrapyrrole binding	17/200	8.92	1.02e-12	-	no
M	3	GO:0016491	oxidoreductase activity	31/200	3.68	8.89e-11	-	no
M	3	GO:0019825	oxygen binding	13/200	9.36	1.55e-10	-	no
M	5	GO:0046872	metal ion binding	38/200	2.80	2.04e-09	-	no
M	4	GO:0004497	monooxygenase activity	13/200	7.28	4.04e-09	-	no
M	4	GO:0043169	cation binding	38/200	2.64	9.85e-09	-	no
M	3	GO:0043167	ion binding	38/200	2.64	9.85e-09	-	no
M	3	GO:0016740	transferase activity	28/200	1.71	1.84e-03	-	no

PS	3	PO:0009005	root	145/200	1.61	7.59e-16	-	yes

KW	0	hypocotyl	-	39/200	16.71	2.41e-37	-	no
KW	0	system	-	72/200	2.97	5.00e-19	-	no
KW	0	endomembrane	-	71/200	3.00	5.38e-19	-	no
KW	0	electron	-	22/200	6.18	1.76e-12	-	no
KW	0	ipr017973	-	14/200	10.25	9.81e-12	-	no
KW	0	ipr017972	-	14/200	10.25	9.81e-12	-	no
KW	0	carrier	-	22/200	5.48	1.94e-11	-	no
KW	0	monooxygenase	-	15/200	8.78	2.18e-11	-	no
KW	0	ipr001128	-	14/200	9.27	4.09e-11	-	no
KW	0	oxygen	-	16/200	6.95	2.09e-10	-	no
KW	0	ipr002401	-	12/200	8.68	1.67e-09	-	no
KW	0	cytochrome	-	15/200	6.14	3.98e-09	-	no
KW	0	defense	-	16/200	4.59	9.77e-08	-	yes
KW	0	oxidase	-	14/200	5.09	1.35e-07	-	no
KW	0	putative	-	46/200	1.99	1.42e-06	-	no
KW	0	group	-	17/200	3.16	8.82e-06	-	no
KW	0	class	-	18/200	3.00	1.04e-05	-	no
KW	0	response	-	35/200	1.95	4.26e-05	-	yes
KW	0	active	-	20/200	2.44	7.90e-05	-	no
KW	0	stage	-	36/200	1.86	9.15e-05	-	no
KW	0	conserved	-	27/200	1.99	2.08e-04	-	no
KW	0	member	-	23/200	2.10	2.68e-04	-	no
KW	0	petal	-	28/200	1.92	3.08e-04	-	no
KW	0	groups	-	10/200	3.06	4.84e-04	-	no
KW	0	metabolic	-	23/200	2.00	5.28e-04	-	no
KW	0	differentiation	-	28/200	1.85	5.49e-04	-	no
KW	0	transferring	-	10/200	3.00	5.71e-04	-	no
KW	0	region	-	27/200	1.87	5.86e-04	-	no
KW	0	anthesis	-	25/200	1.90	6.91e-04	-	no
KW	0	flower	-	17/200	2.23	7.06e-04	-	no
KW	0	expansion	-	27/200	1.84	7.66e-04	-	no
KW	0	oxidoreductase	-	12/200	2.57	8.91e-04	-	no
KW	0	transmembrane	-	16/200	2.20	1.06e-03	-	no
KW	0	receptor	-	12/200	2.52	1.07e-03	-	no
KW	0	process	-	33/200	1.61	2.21e-03	-	no
KW	0	ipr008271	-	11/200	2.25	3.92e-03	-	no
KW	0	synthase	-	10/200	2.28	4.91e-03	-	no
KW	0	ipr017442	-	11/200	2.09	7.04e-03	-	no
KW	0	serine	-	16/200	1.80	8.42e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

Top Page

label http://www.w3.org/2000/01/rdf-schema#label