ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT4G19430.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u421943001000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G30710.1 | 0.998723 | FAD-binding domain-containing protein | OMAT1P010780 | - | - | - |
| AT3G26140.1 | 0.997499 | glycosyl hydrolase family 5 protein / cellulase family protein | OMAT3P108470 | - | - | - |
| AT3G63095.1 | 0.995353 | Encodes a Protease inhibitor/seed storage/LTP family protein | OMAT3P018060 | - | - | - |
| AT3G43120.1 | 0.99481 | auxin-responsive protein-related | OMAT3P011280 | - | - | - |
| AT1G35310.1 | 0.994684 | MLP168 (MLP-LIKE PROTEIN 168) | OMAT1P110800 | - | OMAT1P012120 | - |
| AT3G25050.1 | 0.994386 | XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) | OMAT3P009400 | - | - | - |
| AT2G02140.1 | 0.994368 | LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72) | OMAT2P000370 | - | - | - |
| AT1G74550.1 | 0.994341 | CYP98A9 | OMAT1P021710 | - | - | - |
| AT3G28810.1 | 0.994329 | unknown protein | OMAT3P109360 | - | OMAT3P010770 | - |
| AT2G36190.1 | 0.99401 | AtcwINV4 (Arabidopsis thaliana cell wall invertase 4) | OMAT2P108230 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G33900.1 | -0.684094 | kelch repeat-containing F-box family protein | - | - | - | - |
| AT1G41910.1 | -0.634428 | transposable element gene | - | - | - | - |
| AT1G50190.1 | -0.610856 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT4G04440.1 | -0.604436 | transposable element gene | - | - | - | - |
| AT2G05750.1 | -0.601629 | transposable element gene | - | - | - | - |
| AT5G53230.1 | -0.600874 | unknown protein | - | - | - | - |
| AT4G04590.1 | -0.598555 | transposable element gene | - | - | - | - |
| AT5G32616.1 | -0.581381 | transposable element gene | - | - | - | - |
| AT5G47280.1 | -0.568982 | ADR1-L3 (ADR1-like 3) | - | - | - | - |
| AT1G61575.1 | -0.567851 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 7.21e-21 | :20 terms with high significance | |
| 7.21e-21 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0010876 | lipid localization | 10/200 | 10.33 | 4.29e-09 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 19/200 | 3.65 | 3.28e-07 | - | no |
| B | 3 | GO:0033036 | macromolecule localization | 11/200 | 3.18 | 2.06e-04 | - | no |
| B | 3 | GO:0022414 | reproductive process | 13/200 | 2.16 | 3.12e-03 | - | no |
| B | 3 | GO:0006810 | transport | 18/200 | 1.76 | 7.31e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 18/200 | 1.75 | 7.53e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 98/200 | 4.03 | 2.30e-38 | - | no |
| C | 3 | GO:0044464 | cell part | 149/200 | 1.63 | 3.06e-17 | - | yes |
| C | 5 | GO:0009505 | plant-type cell wall | 11/200 | 6.98 | 7.33e-08 | - | no |
| C | 4 | GO:0005618 | cell wall | 13/200 | 3.92 | 7.21e-06 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 13/200 | 3.89 | 7.82e-06 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 20/200 | 9.99 | 1.50e-15 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 51/200 | 3.27 | 5.88e-15 | - | no |
| M | 3 | GO:0004857 | enzyme inhibitor activity | 14/200 | 13.38 | 2.07e-13 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 27/200 | 4.54 | 1.12e-11 | - | no |
| M | 4 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | 18/200 | 6.77 | 2.98e-11 | - | no |
| M | 5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 17/200 | 6.86 | 7.77e-11 | - | no |
| M | 3 | GO:0008289 | lipid binding | 12/200 | 8.79 | 1.42e-09 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 112/200 | 3.84 | 2.66e-43 | - | no |
| PS | 3 | PO:0009031 | sepal | 158/200 | 1.71 | 3.31e-22 | - | yes |
| PS | 3 | PO:0009032 | petal | 153/200 | 1.75 | 9.26e-22 | - | yes |
| PS | 5 | PO:0009046 | flower | 166/200 | 1.60 | 7.21e-21 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 166/200 | 1.59 | 1.59e-20 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 155/200 | 1.64 | 3.19e-19 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 155/200 | 1.64 | 3.19e-19 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 162/200 | 1.58 | 4.40e-19 | - | yes |
| PS | 3 | PO:0009006 | shoot | 167/200 | 1.54 | 4.40e-19 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 139/200 | 1.68 | 2.73e-16 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 139/200 | 1.54 | 6.95e-13 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 131/200 | 1.56 | 5.14e-12 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 128/200 | 1.52 | 1.04e-10 | - | yes |
| PS | 4 | PO:0009001 | fruit | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 3 | PO:0009010 | seed | 118/200 | 1.21 | 1.66e-03 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 114/200 | 3.89 | 7.12e-45 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 168/200 | 1.65 | 1.72e-23 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 168/200 | 1.60 | 7.64e-22 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 158/200 | 1.63 | 1.34e-19 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 159/200 | 1.61 | 2.86e-19 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 117/200 | 1.30 | 4.79e-05 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 117/200 | 1.29 | 6.02e-05 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 108/200 | 1.32 | 7.93e-05 | - | yes |
| KW | 0 | anthesis | - | 135/200 | 10.27 | 8.25e-112 | - | no |
| KW | 0 | petal | - | 136/200 | 9.32 | 4.08e-107 | - | no |
| KW | 0 | expansion | - | 136/200 | 9.25 | 1.12e-106 | - | no |
| KW | 0 | differentiation | - | 136/200 | 8.99 | 5.17e-105 | - | no |
| KW | 0 | stage | - | 145/200 | 7.49 | 6.58e-103 | - | no |
| KW | 0 | germinated | - | 98/200 | 17.71 | 2.00e-99 | - | no |
| KW | 0 | globular | - | 87/200 | 23.18 | 7.13e-98 | - | no |
| KW | 0 | pollen | - | 109/200 | 12.21 | 4.12e-94 | - | no |
| KW | 0 | mature | - | 104/200 | 11.63 | 6.96e-87 | - | no |
| KW | 0 | endomembrane | - | 98/200 | 4.15 | 2.15e-39 | - | no |
| KW | 0 | system | - | 98/200 | 4.04 | 1.82e-38 | - | no |
| KW | 0 | pectin | - | 23/200 | 15.18 | 8.38e-22 | - | no |
| KW | 0 | ipr011050 | - | 17/200 | 17.45 | 7.91e-18 | - | no |
| KW | 0 | virulence | - | 17/200 | 17.24 | 9.89e-18 | - | no |
| KW | 0 | sepal | - | 22/200 | 10.19 | 4.42e-17 | - | no |
| KW | 0 | ipr012334 | - | 16/200 | 16.73 | 1.29e-16 | - | no |
| KW | 0 | pectinesterase | - | 15/200 | 15.99 | 2.03e-15 | - | no |
| KW | 0 | whorl | - | 21/200 | 8.98 | 2.94e-15 | - | no |
| KW | 0 | inhibitor | - | 23/200 | 7.69 | 5.04e-15 | - | no |
| KW | 0 | lyase | - | 19/200 | 9.57 | 1.55e-14 | - | no |
| KW | 0 | ipr006501 | - | 12/200 | 16.22 | 6.26e-13 | - | no |
| KW | 0 | storage | - | 13/200 | 11.44 | 1.06e-11 | - | no |
| KW | 0 | lipid | - | 20/200 | 5.82 | 4.73e-11 | - | no |
| KW | 0 | glycoside | - | 17/200 | 6.45 | 2.09e-10 | - | no |
| KW | 0 | hydrolase | - | 28/200 | 3.84 | 2.59e-10 | - | no |
| KW | 0 | flower | - | 28/200 | 3.67 | 7.45e-10 | - | no |
| KW | 0 | active | - | 27/200 | 3.30 | 1.44e-08 | - | no |
| KW | 0 | carbohydrate | - | 18/200 | 4.59 | 1.83e-08 | - | no |
| KW | 0 | allergen | - | 10/200 | 8.80 | 2.28e-08 | - | no |
| KW | 0 | catalytic | - | 27/200 | 2.66 | 1.19e-06 | - | no |
| KW | 0 | enzyme | - | 14/200 | 4.15 | 1.77e-06 | - | no |
| KW | 0 | cation | - | 10/200 | 5.58 | 2.16e-06 | - | no |
| KW | 0 | metabolic | - | 27/200 | 2.35 | 1.20e-05 | - | no |
| KW | 0 | gametophyte | - | 13/200 | 3.31 | 4.58e-05 | - | no |
| KW | 0 | terminal | - | 34/200 | 1.76 | 3.86e-04 | - | no |
| KW | 0 | glycosyl | - | 12/200 | 2.81 | 3.91e-04 | - | no |
| KW | 0 | member | - | 21/200 | 1.92 | 1.51e-03 | - | no |
| KW | 0 | subgroup | - | 10/200 | 2.46 | 2.74e-03 | - | no |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | phosphorylation | - | 13/200 | 2.12 | 3.72e-03 | - | no |
| KW | 0 | process | - | 32/200 | 1.56 | 4.10e-03 | - | no |
| KW | 0 | region | - | 24/200 | 1.66 | 5.24e-03 | - | no |
| KW | 0 | serine | - | 16/200 | 1.80 | 8.42e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
