ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT4G22060.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u422206001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G34123.1 | 0.99093 | Encodes a defensin-like (DEFL) family protein. | - | - | - | - |
| AT1G59800.1 | 0.990645 | cullin-related | OMAT1P016320 | - | - | - |
| AT3G20030.1 | 0.990211 | F-box family protein | OMAT3P007580 | - | - | - |
| AT1G21395.1 | 0.989929 | unknown protein | OMAT1P007820 | - | - | - |
| AT5G04045.1 | 0.989889 | Expressed protein | OMAT5P001200 | - | - | - |
| AT5G55320.1 | 0.989505 | membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related | OMAT5P114430 | - | - | - |
| AT4G20800.1 | 0.989355 | FAD-binding domain-containing protein | OMAT4P006300 | - | - | - |
| AT2G44250.1 | 0.989326 | unknown protein | OMAT2P012260 | - | - | - |
| AT4G03945.1 | 0.988576 | enzyme inhibitor/ pectinesterase | - | - | - | - |
| AT4G32100.1 | 0.987066 | galactosyltransferase | OMAT4P109110 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G01215.1 | -0.641689 | other RNA | - | - | OMAT5P000060 | - |
| AT1G01020.1 | -0.635514 | ARV1 | - | - | - | - |
| AT3G13270.1 | -0.605908 | transposable element gene | - | - | - | - |
| AT4G08351.1 | -0.595903 | unknown protein | - | - | - | - |
| AT2G12025.1 | -0.595622 | transposable element gene | - | - | - | - |
| AT2G16200.1 | -0.593581 | protein binding / structural molecule | - | - | - | - |
| AT5G40520.2 | -0.592518 | unknown protein | - | - | - | - |
| AT1G04985.1 | -0.579345 | unknown protein | OMAT1P101300 | - | - | - |
| AT4G26488.1 | -0.567409 | other RNA | - | - | OMAT4P008390 | - |
| AT3G33121.1 | -0.564667 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.33e-07 | :20 terms with high significance | |
| 1.33e-07 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0044248 | cellular catabolic process | 10/200 | 2.77 | 1.09e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 11/200 | 2.10 | 6.63e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 11/200 | 2.01 | 9.43e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 111/200 | 4.57 | 2.67e-50 | - | no |
| C | 3 | GO:0044464 | cell part | 141/200 | 1.54 | 3.78e-13 | - | no |
| M | 3 | GO:0004857 | enzyme inhibitor activity | 11/200 | 10.51 | 7.49e-10 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 12/200 | 5.99 | 1.33e-07 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 14/200 | 2.36 | 1.00e-03 | - | no |
| PS | 3 | PO:0020092 | female gametophyte | 10/200 | 3.70 | 9.72e-05 | - | no |
| KW | 0 | endomembrane | - | 111/200 | 4.70 | 1.65e-51 | - | no |
| KW | 0 | system | - | 111/200 | 4.58 | 2.03e-50 | - | no |
| KW | 0 | defensin | - | 26/200 | 20.01 | 1.22e-27 | - | no |
| KW | 0 | secreted | - | 15/200 | 22.27 | 9.15e-18 | - | no |
| KW | 0 | encodes | - | 69/200 | 2.70 | 5.47e-16 | - | no |
| KW | 0 | weight | - | 13/200 | 19.30 | 7.33e-15 | - | no |
| KW | 0 | cysteine | - | 18/200 | 8.18 | 1.13e-12 | - | no |
| KW | 0 | ipr006501 | - | 11/200 | 14.87 | 1.29e-11 | - | no |
| KW | 0 | pectinesterase | - | 12/200 | 12.79 | 1.33e-11 | - | no |
| KW | 0 | small | - | 20/200 | 4.96 | 8.59e-10 | - | no |
| KW | 0 | globular | - | 19/200 | 5.06 | 1.51e-09 | - | no |
| KW | 0 | similarity | - | 15/200 | 6.24 | 3.22e-09 | - | no |
| KW | 0 | molecular | - | 14/200 | 6.61 | 4.36e-09 | - | no |
| KW | 0 | inhibitor | - | 16/200 | 5.35 | 1.05e-08 | - | no |
| KW | 0 | sequence | - | 18/200 | 4.74 | 1.11e-08 | - | no |
| KW | 0 | pectin | - | 11/200 | 7.26 | 4.79e-08 | - | no |
| KW | 0 | enzyme | - | 15/200 | 4.45 | 3.39e-07 | - | no |
| KW | 0 | modification | - | 10/200 | 5.88 | 1.31e-06 | - | no |
| KW | 0 | pollen | - | 20/200 | 2.24 | 2.58e-04 | - | no |
| KW | 0 | member | - | 23/200 | 2.10 | 2.68e-04 | - | no |
| KW | 0 | glycosyl | - | 11/200 | 2.58 | 1.30e-03 | - | no |
| KW | 0 | stage | - | 32/200 | 1.65 | 1.68e-03 | - | no |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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