ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT4G29270.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u422927001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G62340.1 | 0.995702 | invertase/pectin methylesterase inhibitor family protein | OMAT5P018980 | - | - | - |
| AT3G04570.1 | 0.992629 | DNA-binding protein-related | OMAT3P001550 | - | - | - |
| AT4G25250.1 | 0.990877 | invertase/pectin methylesterase inhibitor family protein | OMAT4P007900 | - | - | - |
| AT1G09090.2 | 0.990526 | ATRBOHB (respiratory burst oxidase homolog B) | OMAT1P003110 | - | - | - |
| AT5G09290.1 | 0.989697 | 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative | OMAT5P003120 | - | - | - |
| AT4G05200.1 | 0.98937 | protein kinase family protein | OMAT4P101490 | - | - | - |
| AT4G37160.1 | 0.989287 | sks15 (SKU5 Similar 15) | OMAT4P111170 | - | - | - |
| AT4G12550.1 | 0.988853 | AIR1 | OMAT4P003200 | - | - | - |
| AT1G21310.1 | 0.988769 | ATEXT3 (EXTENSIN 3) | OMAT1P106840 | - | OMAT1P007800 | - |
| AT1G31050.1 | 0.98849 | transcription factor | OMAT1P109811,OMAT1P109810 | [OMAT1P109811]-, [OMAT1P109810]- | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G54770.1 | -0.698157 | THI1 | OMAT5P016150 | - | OMAT5P114270 | - |
| AT2G10330.1 | -0.645852 | transposable element gene | - | - | - | - |
| AT4G38225.3 | -0.633132 | unknown protein | OMAT4P013310 | - | - | - |
| AT4G13880.1 | -0.629563 | AtRLP48 (Receptor Like Protein 48) | - | - | - | - |
| AT1G14590.1 | -0.628604 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT3G29036.1 | -0.624945 | unknown protein | - | - | - | - |
| AT5G32598.1 | -0.61918 | transposable element gene | - | - | - | - |
| AT1G20750.1 | -0.618374 | helicase-related | - | - | - | - |
| AT2G06780.1 | -0.610421 | transposable element gene | - | - | - | - |
| AT5G31927.1 | -0.605664 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.84e-08 | :20 terms with high significance | |
| 1.84e-08 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0019748 | secondary metabolic process | 12/200 | 5.18 | 6.90e-07 | - | no |
| B | 4 | GO:0006952 | defense response | 17/200 | 3.73 | 8.65e-07 | - | no |
| B | 3 | GO:0006950 | response to stress | 24/200 | 1.94 | 6.75e-04 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 14/200 | 2.11 | 2.92e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 14/200 | 2.11 | 2.95e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 76/200 | 3.13 | 1.50e-21 | - | yes |
| C | 3 | GO:0044464 | cell part | 126/200 | 1.38 | 3.10e-07 | - | yes |
| M | 4 | GO:0020037 | heme binding | 15/200 | 8.57 | 3.13e-11 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 15/200 | 7.87 | 1.11e-10 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 30/200 | 3.56 | 3.93e-10 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 38/200 | 2.80 | 2.04e-09 | - | no |
| M | 4 | GO:0043169 | cation binding | 38/200 | 2.64 | 9.85e-09 | - | no |
| M | 3 | GO:0043167 | ion binding | 38/200 | 2.64 | 9.85e-09 | - | no |
| M | 3 | GO:0019825 | oxygen binding | 11/200 | 7.92 | 1.84e-08 | - | no |
| M | 4 | GO:0004497 | monooxygenase activity | 11/200 | 6.16 | 2.83e-07 | - | no |
| M | 3 | GO:0016740 | transferase activity | 33/200 | 2.02 | 3.58e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 16/200 | 1.99 | 3.12e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 12/200 | 1.93 | 9.97e-03 | - | no |
| PS | 3 | PO:0009005 | root | 160/200 | 1.78 | 5.09e-25 | - | yes |
| KW | 0 | hypocotyl | - | 43/200 | 18.43 | 5.84e-43 | - | no |
| KW | 0 | system | - | 77/200 | 3.18 | 2.71e-22 | - | yes |
| KW | 0 | endomembrane | - | 76/200 | 3.21 | 2.81e-22 | - | yes |
| KW | 0 | electron | - | 20/200 | 5.62 | 9.18e-11 | - | no |
| KW | 0 | carrier | - | 20/200 | 4.99 | 7.93e-10 | - | no |
| KW | 0 | ipr017973 | - | 12/200 | 8.79 | 1.42e-09 | - | no |
| KW | 0 | ipr017972 | - | 12/200 | 8.79 | 1.42e-09 | - | no |
| KW | 0 | monooxygenase | - | 13/200 | 7.61 | 2.28e-09 | - | no |
| KW | 0 | ipr001128 | - | 12/200 | 7.95 | 4.79e-09 | - | no |
| KW | 0 | oxygen | - | 14/200 | 6.08 | 1.35e-08 | - | no |
| KW | 0 | defense | - | 17/200 | 4.87 | 1.70e-08 | - | no |
| KW | 0 | lectin | - | 11/200 | 7.47 | 3.52e-08 | - | no |
| KW | 0 | oxidase | - | 14/200 | 5.09 | 1.35e-07 | - | no |
| KW | 0 | ipr002401 | - | 10/200 | 7.23 | 1.68e-07 | - | no |
| KW | 0 | cytochrome | - | 13/200 | 5.32 | 1.98e-07 | - | no |
| KW | 0 | putative | - | 47/200 | 2.04 | 5.78e-07 | - | no |
| KW | 0 | tyrosine | - | 15/200 | 4.23 | 6.60e-07 | - | no |
| KW | 0 | signaling | - | 14/200 | 3.76 | 5.83e-06 | - | no |
| KW | 0 | ipr001611 | - | 12/200 | 4.25 | 6.15e-06 | - | no |
| KW | 0 | transmembrane | - | 20/200 | 2.76 | 1.40e-05 | - | no |
| KW | 0 | response | - | 36/200 | 2.01 | 1.81e-05 | - | no |
| KW | 0 | active | - | 21/200 | 2.57 | 2.65e-05 | - | no |
| KW | 0 | groups | - | 12/200 | 3.67 | 2.80e-05 | - | no |
| KW | 0 | transferring | - | 12/200 | 3.60 | 3.45e-05 | - | no |
| KW | 0 | class | - | 17/200 | 2.84 | 3.62e-05 | 0 | yes |
| KW | 0 | stage | - | 36/200 | 1.86 | 9.15e-05 | - | yes |
| KW | 0 | receptor | - | 14/200 | 2.94 | 9.72e-05 | - | no |
| KW | 0 | synthase | - | 13/200 | 2.96 | 1.48e-04 | - | no |
| KW | 0 | kinase | - | 23/200 | 2.18 | 1.54e-04 | - | no |
| KW | 0 | major | - | 10/200 | 3.50 | 1.56e-04 | - | no |
| KW | 0 | flower | - | 18/200 | 2.36 | 2.58e-04 | - | no |
| KW | 0 | process | - | 36/200 | 1.76 | 2.84e-04 | - | no |
| KW | 0 | ipr017442 | - | 14/200 | 2.66 | 2.92e-04 | - | no |
| KW | 0 | petal | - | 28/200 | 1.92 | 3.08e-04 | - | yes |
| KW | 0 | group | - | 14/200 | 2.60 | 3.65e-04 | - | no |
| KW | 0 | ipr017441 | - | 12/200 | 2.79 | 4.18e-04 | - | no |
| KW | 0 | ipr008271 | - | 13/200 | 2.66 | 4.34e-04 | - | no |
| KW | 0 | metabolic | - | 23/200 | 2.00 | 5.28e-04 | - | no |
| KW | 0 | differentiation | - | 28/200 | 1.85 | 5.49e-04 | - | yes |
| KW | 0 | ipr000719 | - | 15/200 | 2.41 | 5.69e-04 | - | no |
| KW | 0 | anthesis | - | 25/200 | 1.90 | 6.91e-04 | - | no |
| KW | 0 | expansion | - | 27/200 | 1.84 | 7.66e-04 | - | yes |
| KW | 0 | ipr011009 | - | 15/200 | 2.32 | 8.41e-04 | - | no |
| KW | 0 | leucine | - | 13/200 | 2.48 | 8.77e-04 | - | no |
| KW | 0 | oxidoreductase | - | 12/200 | 2.57 | 8.91e-04 | - | no |
| KW | 0 | conserved | - | 25/200 | 1.85 | 1.06e-03 | - | no |
| KW | 0 | amino | - | 18/200 | 2.09 | 1.10e-03 | - | no |
| KW | 0 | glycosyl | - | 11/200 | 2.58 | 1.30e-03 | - | no |
| KW | 0 | phosphorylation | - | 14/200 | 2.28 | 1.40e-03 | - | no |
| KW | 0 | related | - | 43/200 | 1.53 | 1.47e-03 | - | no |
| KW | 0 | serine | - | 18/200 | 2.02 | 1.63e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | - | no |
| KW | 0 | region | - | 25/200 | 1.73 | 2.63e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | transferase | - | 13/200 | 2.12 | 3.66e-03 | - | no |
| KW | 0 | threonine | - | 15/200 | 2.00 | 3.73e-03 | - | no |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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