Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT1G33160.1	0.818484	pseudogene, similar to actin, blastp match of 74% identity and 8.3e-48 P-value to GP\|9965319\|gb\|AAG10041.1\|AF288226_1\|AF288226 actin {Setaria italica}	-	-	-	-
AT2G44070.1	0.808065	GTP binding / translation initiation factor	-	-	-	-
AT5G34834.1	0.7636	transposable element gene	-	-	-	-
AT5G47390.1	0.758038	myb family transcription factor	OMAT5P013390	-	OMAT5P111890	-
AT3G26040.1	0.744927	transferase family protein	-	-	-	-
AT1G06060.1	0.740305	RanBPM-related	-	-	-	-
AT5G18633.1	0.735503	transposable element gene	-	-	-	-
AT2G23170.1	0.734005	GH3.3	OMAT2P104020	-	-	-
AT2G39400.1	0.731188	hydrolase, alpha/beta fold family protein	OMAT2P010390	-	OMAT2P109610	-
AT1G66040.1	0.728533	VIM4 (VARIANT IN METHYLATION 4)	-	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT3G46290.1	-0.767117	protein kinase, putative	OMAT3P011910	-	OMAT3P110400	-
AT3G05675.2	-0.733086	protein binding	-	-	-	-
AT2G21188.1	-0.72241	other RNA	-	-	-	-
AT5G24310.1	-0.682591	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	OMAT5P008280	-	-	-
AT5G34831.1	-0.676816	pseudogene, hypothetical protein, similar to contains similarity to Drosophila suppressor of sable protein (GB:M57889)	-	-	-	-
AT1G36990.1	-0.673368	unknown protein	-	-	-	-
AT3G22470.1	-0.655786	pentatricopeptide (PPR) repeat-containing protein	-	-	-	-
AT3G45275.1	-0.653074	Encodes a ECA1 gametogenesis related family protein	-	-	-	-
AT2G40230.1	-0.643102	transferase family protein	-	-	-	-
AT1G14680.1	-0.642328	unknown protein	-	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 1.00e-06	:20 terms with high significance
1.00e-06 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	3	GO:0042221	response to chemical stimulus	22/200	1.93	1.11e-03	-	no
B	4	GO:0010033	response to organic substance	14/200	2.09	3.12e-03	-	no
B	3	GO:0006950	response to stress	22/200	1.77	3.23e-03	1.11E-09	no

M	3	GO:0003700	transcription factor activity	19/200	1.88	2.88e-03	-	no

KW	0	responsive	-	10/200	3.34	2.34e-04	-	no
KW	0	response	-	29/200	1.62	3.66e-03	3.49E-15	no
KW	0	stimulus	-	10/200	2.32	4.26e-03	-	no
KW	0	finger	-	17/200	1.84	5.55e-03	6.69E-17	no
KW	0	stress	-	10/200	2.13	7.91e-03	7.86E-16	no
KW	0	factor	-	27/200	1.54	9.02e-03	2.79E-15	no

(*1)	[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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