AT5G12090.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u521209001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G38270.1 | 0.832561 | transposable element gene | - | - | - | - |
| AT2G13145.1 | 0.825951 | pseudogene, hypothetical protein | - | - | - | - |
| AT4G07425.1 | 0.817133 | transposable element gene | - | - | - | - |
| AT3G30183.1 | 0.802803 | transposable element gene | - | - | - | - |
| AT3G46186.1 | 0.800061 | pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative | - | - | - | - |
| AT1G35900.1 | 0.798509 | unknown protein | - | - | - | - |
| AT1G35745.1 | 0.794805 | transposable element gene | - | - | - | - |
| AT4G04530.1 | 0.794316 | transposable element gene | - | - | - | - |
| AT5G28660.1 | 0.792888 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT3G23125.1 | 0.792828 | MIR173 | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G33360.1 | -0.762744 | transposable element gene | - | - | - | - |
| AT2G30230.1 | -0.753289 | unknown protein | - | - | - | - |
| AT4G20260.4 | -0.750389 | DREPP plasma membrane polypeptide family protein | OMAT4P006170 | - | - | - |
| AT5G36130.1 | -0.739904 | cytochrome P450 family | - | - | - | - |
| AT2G07813.1 | -0.729105 | Pseudogene of ATMG01260 | - | - | - | - |
| AT3G58490.1 | -0.72667 | phosphatidic acid phosphatase family protein / PAP2 family protein | OMAT3P016410 | - | - | - |
| AT1G57613.1 | -0.71263 | unknown protein | - | - | - | - |
| AT4G11830.2 | -0.70587 | PLDGAMMA2 | - | - | - | - |
| AT3G24550.1 | -0.691778 | ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) | OMAT3P009250 | - | - | - |
| AT2G23755.1 | -0.688591 | unknown protein | - | - | OMAT2P004790 | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| KW | 0 | transposable_element_gene | - | 88/200 | 3.75 | 2.43e-31 | - | no |
| KW | 0 | transposable | - | 88/200 | 3.75 | 2.48e-31 | - | no |
| KW | 0 | value | - | 75/200 | 4.46 | 5.39e-31 | - | no |
| KW | 0 | element | - | 88/200 | 3.68 | 1.00e-30 | - | no |
| KW | 0 | retrotransposon | - | 45/200 | 4.44 | 3.21e-18 | - | no |
| KW | 0 | musculus | - | 12/200 | 9.07 | 9.70e-10 | - | no |
| KW | 0 | transposase | - | 20/200 | 4.40 | 7.02e-09 | - | no |
| KW | 0 | pseudogene | - | 31/200 | 3.01 | 1.22e-08 | - | no |
| KW | 0 | ty1_copia | - | 15/200 | 5.06 | 5.95e-08 | - | no |
| KW | 0 | copia | - | 15/200 | 5.00 | 7.02e-08 | - | no |
| KW | 0 | cacta | - | 12/200 | 5.97 | 1.38e-07 | - | no |
| KW | 0 | hypothetical | - | 20/200 | 3.45 | 4.31e-07 | - | no |
| KW | 0 | oleracea | - | 11/200 | 5.40 | 1.14e-06 | - | no |
| KW | 0 | blastp | - | 13/200 | 4.53 | 1.35e-06 | - | no |
| KW | 0 | sativa | - | 11/200 | 4.88 | 3.25e-06 | - | no |
| KW | 0 | identity | - | 13/200 | 3.97 | 6.11e-06 | - | no |
| KW | 0 | oryza | - | 11/200 | 4.53 | 6.91e-06 | - | no |
| KW | 0 | brassica | - | 11/200 | 4.29 | 1.17e-05 | - | no |
| KW | 0 | similar | - | 24/200 | 2.32 | 4.23e-05 | 1.00E-27 | no |
| KW | 0 | polyprotein | - | 12/200 | 3.34 | 7.48e-05 | - | no |
| KW | 0 | gypsy | - | 15/200 | 2.81 | 1.01e-04 | - | no |
| KW | 0 | subfamily | - | 10/200 | 3.10 | 4.35e-04 | - | no |
| (*1) | [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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