AT5G16490.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u521649001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G63710.1 | 0.846268 | leucine-rich repeat transmembrane protein kinase, putative | OMAT5P019530 | - | - | - |
| AT1G68810.1 | 0.844675 | basic helix-loop-helix (bHLH) family protein | OMAT1P019460 | - | - | - |
| AT4G28710.1 | 0.842929 | XIH | OMAT4P009370 | - | - | - |
| AT2G39480.1 | 0.842184 | PGP6 (P-GLYCOPROTEIN 6) | OMAT2P109650 | - | - | - |
| AT1G61180.2 | 0.841465 | disease resistance protein (CC-NBS-LRR class), putative | - | - | - | - |
| AT1G70750.1 | 0.841221 | unknown protein | OMAT1P117900 | - | - | - |
| AT1G64700.1 | 0.840356 | unknown protein | - | - | - | - |
| AT5G04930.1 | 0.837897 | ALA1 (aminophospholipid ATPase1) | OMAT5P001550 | - | - | - |
| AT1G22910.3 | 0.836761 | RNA recognition motif (RRM)-containing protein | OMAT1P008420 | - | - | - |
| AT5G55600.1 | 0.835672 | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | OMAT5P114530,OMAT5P114540 | [OMAT5P114530]-, [OMAT5P114540]- | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G07425.1 | -0.799251 | transposable element gene | - | - | - | - |
| AT2G14010.1 | -0.79358 | transposable element gene | - | - | - | - |
| AT5G41430.1 | -0.781931 | zinc finger (C3HC4-type RING finger) family protein | - | - | - | - |
| AT3G30832.1 | -0.777038 | transposable element gene | - | - | - | - |
| AT2G11530.1 | -0.758086 | transposable element gene | - | - | - | - |
| AT1G24640.1 | -0.757218 | transposable element gene | - | - | - | - |
| AT2G13145.1 | -0.756092 | pseudogene, hypothetical protein | - | - | - | - |
| AT3G32250.1 | -0.750146 | transposable element gene | - | - | - | - |
| AT5G42120.1 | -0.745908 | lectin protein kinase family protein | - | - | - | - |
| AT1G11690.1 | -0.745602 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-18 | :20 terms with high significance | |
| 1.00e-18 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006810 | transport | 28/200 | 2.73 | 4.36e-07 | 8.46E-16 | yes |
| B | 3 | GO:0051234 | establishment of localization | 28/200 | 2.72 | 4.63e-07 | 1.74E-17 | yes |
| B | 5 | GO:0006796 | phosphate metabolic process | 18/200 | 2.71 | 4.23e-05 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 18/200 | 2.71 | 4.28e-05 | - | no |
| B | 5 | GO:0006464 | protein modification process | 22/200 | 2.11 | 3.21e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 22/200 | 1.94 | 1.03e-03 | - | no |
| B | 4 | GO:0048513 | organ development | 11/200 | 2.49 | 1.77e-03 | 1.01E-16 | no |
| B | 4 | GO:0048731 | system development | 11/200 | 2.48 | 1.79e-03 | 3.35E-16 | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 19/200 | 1.90 | 2.66e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 20/200 | 1.85 | 2.86e-03 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 28/200 | 1.66 | 2.92e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 19/200 | 1.88 | 2.98e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 31/200 | 1.59 | 3.46e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 21/200 | 1.78 | 3.63e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 17/200 | 1.90 | 3.97e-03 | - | yes |
| B | 3 | GO:0050789 | regulation of biological process | 28/200 | 1.62 | 4.16e-03 | - | yes |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 19/200 | 1.80 | 4.60e-03 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 31/200 | 1.56 | 4.64e-03 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 19/200 | 1.78 | 5.23e-03 | 1.01E-15 | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 20/200 | 1.75 | 5.25e-03 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 25/200 | 1.64 | 5.39e-03 | - | yes |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 19/200 | 1.74 | 6.96e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 18/200 | 1.76 | 7.01e-03 | 4.85E-11 | no |
| C | 4 | GO:0005886 | plasma membrane | 41/200 | 3.31 | 2.40e-12 | 3.64E-21 | yes |
| C | 3 | GO:0016020 | membrane | 58/200 | 2.12 | 4.55e-09 | 3.64E-21 | yes |
| C | 3 | GO:0044464 | cell part | 113/200 | 1.23 | 8.86e-04 | 2.86E-16 | yes |
| C | 5 | GO:0005634 | nucleus | 27/200 | 1.73 | 1.93e-03 | 5.36E-16 | no |
| M | 4 | GO:0022804 | active transmembrane transporter activity | 17/200 | 5.01 | 1.11e-08 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 22/200 | 3.92 | 1.25e-08 | - | no |
| M | 5 | GO:0015075 | ion transmembrane transporter activity | 15/200 | 4.79 | 1.26e-07 | - | no |
| M | 3 | GO:0005515 | protein binding | 37/200 | 2.36 | 2.80e-07 | 1.74E-17 | yes |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 17/200 | 3.86 | 5.46e-07 | - | no |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 18/200 | 3.48 | 1.24e-06 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 24/200 | 2.62 | 5.65e-06 | - | no |
| M | 5 | GO:0016301 | kinase activity | 20/200 | 2.49 | 6.22e-05 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 13/200 | 2.92 | 1.70e-04 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 13/200 | 2.89 | 1.88e-04 | - | no |
| M | 3 | GO:0016740 | transferase activity | 30/200 | 1.83 | 4.23e-04 | 7.54E-17 | no |
| M | 3 | GO:0003700 | transcription factor activity | 21/200 | 2.08 | 5.24e-04 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 14/200 | 2.26 | 1.54e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 23/200 | 1.66 | 6.11e-03 | 1.74E-17 | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 156/200 | 2.01 | 1.99e-30 | - | yes |
| PS | 3 | PO:0009013 | meristem | 158/200 | 1.97 | 4.97e-30 | 4.85E-11 | yes |
| PS | 5 | PO:0008037 | seedling | 156/200 | 1.77 | 2.44e-23 | 4.85E-11 | yes |
| PS | 3 | PO:0009005 | root | 157/200 | 1.74 | 5.81e-23 | 1.43E-16 | yes |
| PS | 4 | PO:0009025 | leaf | 157/200 | 1.71 | 8.52e-22 | 4.19E-17 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 147/200 | 1.78 | 4.14e-21 | - | yes |
| PS | 4 | PO:0009009 | embryo | 159/200 | 1.65 | 2.03e-20 | 2.90E-16 | yes |
| PS | 5 | PO:0000013 | cauline leaf | 140/200 | 1.81 | 5.40e-20 | - | no |
| PS | 3 | PO:0009010 | seed | 159/200 | 1.63 | 9.42e-20 | 4.85E-11 | yes |
| PS | 4 | PO:0009001 | fruit | 159/200 | 1.62 | 1.79e-19 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 159/200 | 1.62 | 1.79e-19 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 162/200 | 1.58 | 4.40e-19 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 147/200 | 1.71 | 4.99e-19 | - | yes |
| PS | 4 | PO:0009047 | stem | 145/200 | 1.72 | 8.26e-19 | 4.71E-16 | yes |
| PS | 3 | PO:0009032 | petal | 148/200 | 1.69 | 1.00e-18 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 152/200 | 1.61 | 1.81e-17 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 152/200 | 1.61 | 1.81e-17 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 141/200 | 1.68 | 8.22e-17 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 160/200 | 1.53 | 8.52e-17 | 4.85E-11 | yes |
| PS | 3 | PO:0009006 | shoot | 163/200 | 1.50 | 1.29e-16 | 4.85E-11 | yes |
| PS | 5 | PO:0009052 | pedicel | 138/200 | 1.70 | 1.30e-16 | - | yes |
| PS | 5 | PO:0009046 | flower | 159/200 | 1.53 | 1.57e-16 | - | yes |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 145/200 | 1.61 | 7.75e-16 | - | yes |
| PS | 5 | PO:0020038 | petiole | 131/200 | 1.72 | 1.01e-15 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 126/200 | 1.72 | 1.21e-14 | 4.85E-11 | no |
| PS | 5 | PO:0009028 | microsporophyll | 135/200 | 1.61 | 7.76e-14 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 121/200 | 1.46 | 1.90e-08 | - | no |
| PS | 3 | PO:0000034 | vascular system | 14/200 | 4.29 | 1.19e-06 | - | no |
| PS | 4 | PO:0005020 | vascular bundle | 11/200 | 5.32 | 1.33e-06 | - | no |
| PS | 3 | PO:0009015 | vascular tissue | 10/200 | 5.64 | 1.96e-06 | - | no |
| PS | 4 | PO:0005679 | epidermis | 22/200 | 1.78 | 3.17e-03 | 7.47E-17 | no |
| PS | 3 | PO:0009014 | dermal tissue | 22/200 | 1.78 | 3.19e-03 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | 4.85E-11 | no |
| PG | 5 | PO:0007133 | leaf production | 147/200 | 1.75 | 4.07e-20 | 4.85E-11 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 147/200 | 1.75 | 4.17e-20 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 147/200 | 1.74 | 8.92e-20 | 1.74E-17 | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 139/200 | 1.81 | 1.30e-19 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 139/200 | 1.81 | 1.38e-19 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 158/200 | 1.60 | 1.17e-18 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 160/200 | 1.57 | 3.31e-18 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 155/200 | 1.60 | 8.37e-18 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 148/200 | 1.64 | 1.96e-17 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 161/200 | 1.54 | 2.42e-17 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 141/200 | 1.70 | 2.56e-17 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 148/200 | 1.64 | 3.14e-17 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 138/200 | 1.68 | 3.19e-16 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 136/200 | 1.65 | 4.83e-15 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 130/200 | 1.63 | 1.58e-13 | - | yes |
| KW | 0 | plasma | - | 40/200 | 3.49 | 8.41e-13 | 3.64E-21 | yes |
| KW | 0 | transmembrane | - | 30/200 | 4.13 | 9.67e-12 | - | no |
| KW | 0 | leucine | - | 22/200 | 4.19 | 3.57e-09 | - | no |
| KW | 0 | membrane | - | 56/200 | 2.10 | 1.15e-08 | 3.64E-21 | yes |
| KW | 0 | movement | - | 11/200 | 7.20 | 5.23e-08 | 3.52E-16 | no |
| KW | 0 | ipr013210 | - | 10/200 | 7.59 | 1.03e-07 | - | no |
| KW | 0 | phosphorylation | - | 21/200 | 3.42 | 2.71e-07 | - | no |
| KW | 0 | ipr001611 | - | 13/200 | 4.60 | 1.13e-06 | - | no |
| KW | 0 | ipr017441 | - | 16/200 | 3.73 | 1.73e-06 | - | no |
| KW | 0 | transporter | - | 21/200 | 3.02 | 2.07e-06 | - | no |
| KW | 0 | ipr000719 | - | 19/200 | 3.05 | 5.03e-06 | - | no |
| KW | 0 | transport | - | 25/200 | 2.57 | 5.16e-06 | 8.46E-16 | no |
| KW | 0 | threonine | - | 21/200 | 2.80 | 6.93e-06 | - | no |
| KW | 0 | region | - | 32/200 | 2.22 | 7.12e-06 | 1.08E-15 | no |
| KW | 0 | ipr011009 | - | 19/200 | 2.94 | 8.64e-06 | - | no |
| KW | 0 | amino | - | 22/200 | 2.55 | 1.90e-05 | 1.80E-15 | no |
| KW | 0 | serine | - | 22/200 | 2.47 | 3.24e-05 | - | no |
| KW | 0 | ipr017442 | - | 15/200 | 2.85 | 8.79e-05 | - | no |
| KW | 0 | nucleus | - | 27/200 | 2.09 | 9.28e-05 | 5.36E-16 | no |
| KW | 0 | ipr008271 | - | 14/200 | 2.87 | 1.29e-04 | - | no |
| KW | 0 | kinase | - | 22/200 | 2.08 | 3.89e-04 | 3.17E-12 | no |
| KW | 0 | associated | - | 16/200 | 2.34 | 5.46e-04 | 3.81E-15 | no |
| KW | 0 | repeat | - | 25/200 | 1.93 | 5.79e-04 | - | no |
| KW | 0 | regulation | - | 25/200 | 1.89 | 7.54e-04 | 1.97E-15 | yes |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | terminal | - | 31/200 | 1.61 | 3.00e-03 | 6.83E-16 | no |
| KW | 0 | transcription | - | 24/200 | 1.65 | 5.60e-03 | 4.85E-11 | no |
| KW | 0 | response | - | 28/200 | 1.56 | 6.81e-03 | 4.85E-11 | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | 1.35E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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