ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT5G37680.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u523768001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G42860.1 | 0.989518 | zinc knuckle (CCHC-type) family protein | OMAT3P109750 | - | - | - |
| AT5G42290.1 | 0.988548 | transcription activator-related | OMAT5P011690 | - | - | - |
| AT2G01340.1 | 0.988 | unknown protein | OMAT2P000090 | - | - | - |
| AT1G23070.1 | 0.986838 | unknown protein | OMAT1P107450 | - | - | - |
| AT5G66580.1 | 0.986303 | unknown protein | OMAT5P020650 | - | - | - |
| AT1G16730.1 | 0.98625 | unknown protein | OMAT1P105470 | - | OMAT1P006105 | - |
| AT3G03620.1 | 0.986237 | MATE efflux family protein | OMAT3P101100 | - | - | - |
| AT5G09970.1 | 0.98488 | CYP78A7 | OMAT5P003310 | - | - | - |
| AT5G61490.1 | 0.983718 | FUNCTIONS IN: molecular_function unknown | OMAT5P018710 | - | - | - |
| AT1G67600.1 | 0.983697 | FUNCTIONS IN: molecular_function unknown | OMAT1P116800 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G34720.1 | -0.83755 | AVA-P1 | OMAT4P110151 | - | - | - |
| AT3G48140.1 | -0.836842 | senescence-associated protein, putative | OMAT3P012480 | - | - | - |
| AT5G08530.1 | -0.828811 | CI51 (51 kDa subunit of complex I) | OMAT5P102370 | - | - | - |
| AT5G11710.1 | -0.794993 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | OMAT5P004000 | - | - | - |
| AT1G07940.1 | -0.792755 | elongation factor 1-alpha / EF-1-alpha | OMAT1P102410 | - | - | - |
| AT1G20260.1 | -0.77481 | hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | OMAT1P007430 | - | OMAT1P106550 | - |
| AT1G54410.1 | -0.773658 | dehydrin family protein | OMAT1P113460 | - | OMAT1P015140 | - |
| AT2G27960.1 | -0.765812 | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) | OMAT2P105540 | - | - | - |
| AT4G37680.1 | -0.764164 | HHP4 (heptahelical protein 4) | - | - | - | - |
| AT3G52880.2 | -0.760273 | monodehydroascorbate reductase, putative | OMAT3P112500 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 19/200 | 1.93 | 2.18e-03 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 20/200 | 1.88 | 2.41e-03 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 19/200 | 1.90 | 2.66e-03 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 19/200 | 1.89 | 2.71e-03 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 19/200 | 1.89 | 2.71e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 19/200 | 1.88 | 2.98e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 19/200 | 1.86 | 3.25e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 20/200 | 1.83 | 3.30e-03 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 19/200 | 1.80 | 4.60e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 19/200 | 1.76 | 6.12e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 11/200 | 2.10 | 6.63e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 20/200 | 1.70 | 7.47e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 11/200 | 2.01 | 9.43e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 18/200 | 1.78 | 6.28e-03 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 48/200 | 1.48 | 1.65e-03 | - | no |
| PS | 3 | PO:0020097 | generative cell | 48/200 | 1.48 | 1.65e-03 | - | no |
| PS | 4 | PO:0009047 | stem | 103/200 | 1.22 | 3.15e-03 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 101/200 | 1.20 | 5.86e-03 | - | yes |
| PS | 3 | PO:0009010 | seed | 115/200 | 1.18 | 6.06e-03 | - | yes |
| PS | 4 | PO:0009001 | fruit | 115/200 | 1.17 | 7.42e-03 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 115/200 | 1.17 | 7.42e-03 | - | yes |
| KW | 0 | cellular_component | - | 73/200 | 1.50 | 4.45e-05 | - | no |
| KW | 0 | biological_process | - | 84/200 | 1.41 | 9.93e-05 | - | no |
| KW | 0 | molecular_function | - | 71/200 | 1.41 | 4.61e-04 | - | no |
| KW | 0 | transcription | - | 24/200 | 1.65 | 5.60e-03 | - | no |
| KW | 0 | regulation | - | 22/200 | 1.66 | 6.91e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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