AT5G43370.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u524337001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G04950.1 | 0.870107 | NAS1 (NICOTIANAMINE SYNTHASE 1) | OMAT5P101220 | - | - | - |
| AT1G58280.2 | 0.864356 | LOCATED IN: chloroplast | - | - | - | - |
| AT4G01630.1 | 0.857024 | ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) | OMAT4P000570 | - | - | - |
| AT3G02885.1 | 0.849439 | GASA5 (GAST1 PROTEIN HOMOLOG 5) | OMAT3P100840 | - | - | - |
| AT3G27950.1 | 0.839711 | early nodule-specific protein, putative | - | - | - | - |
| AT2G38300.1 | 0.834194 | DNA binding / transcription factor | - | - | - | - |
| AT2G38940.1 | 0.831668 | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) | OMAT2P010210 | - | - | - |
| AT1G36622.1 | 0.830828 | unknown protein | - | - | - | - |
| AT3G01120.1 | 0.822973 | MTO1 (METHIONINE OVERACCUMULATION 1) | OMAT3P100040 | - | - | - |
| AT1G30510.2 | 0.822737 | ATRFNR2 (ROOT FNR 2) | OMAT1P109660 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G50360.1 | -0.779239 | ATCEN2 (CENTRIN2) | OMAT3P013350 | - | - | - |
| AT3G42356.1 | -0.773764 | transposable element gene | - | - | - | - |
| AT1G80831.1 | -0.769686 | unknown protein | - | - | - | - |
| AT1G09795.1 | -0.750347 | ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) | OMAT1P003390 | - | - | - |
| AT5G45520.1 | -0.725798 | unknown protein | - | - | - | - |
| AT4G24980.1 | -0.709608 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT1G15940.1 | -0.707192 | binding | OMAT1P005740 | - | - | - |
| AT4G15020.1 | -0.705216 | DNA binding / protein dimerization | OMAT4P004150 | - | - | - |
| AT5G05060.1 | -0.704513 | FUNCTIONS IN: molecular_function unknown | OMAT5P101270 | - | - | - |
| AT5G56910.1 | -0.702163 | INVOLVED IN: biological_process unknown | OMAT5P016960 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006811 | ion transport | 15/200 | 6.20 | 3.46e-09 | 8.46E-16 | yes |
| B | 3 | GO:0042221 | response to chemical stimulus | 29/200 | 2.54 | 1.22e-06 | - | no |
| B | 3 | GO:0006950 | response to stress | 30/200 | 2.42 | 2.31e-06 | 2.13E-16 | yes |
| B | 4 | GO:0010035 | response to inorganic substance | 10/200 | 3.51 | 1.53e-04 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 10/200 | 3.48 | 1.64e-04 | - | no |
| B | 4 | GO:0009314 | response to radiation | 10/200 | 3.37 | 2.18e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 3 | GO:0006810 | transport | 20/200 | 1.95 | 1.51e-03 | 8.46E-16 | yes |
| B | 3 | GO:0051234 | establishment of localization | 20/200 | 1.95 | 1.56e-03 | - | yes |
| B | 4 | GO:0009725 | response to hormone stimulus | 10/200 | 2.12 | 8.35e-03 | - | no |
| C | 3 | GO:0044464 | cell part | 131/200 | 1.43 | 5.76e-09 | - | yes |
| C | 3 | GO:0016020 | membrane | 50/200 | 1.83 | 6.09e-06 | 3.64E-21 | yes |
| C | 5 | GO:0005773 | vacuole | 12/200 | 3.48 | 4.95e-05 | 5.23E-15 | no |
| C | 4 | GO:0005886 | plasma membrane | 24/200 | 1.94 | 6.65e-04 | 3.64E-21 | no |
| C | 3 | GO:0012505 | endomembrane system | 39/200 | 1.61 | 9.98e-04 | - | no |
| C | 4 | GO:0031967 | organelle envelope | 10/200 | 2.40 | 3.34e-03 | - | no |
| C | 3 | GO:0031975 | envelope | 10/200 | 2.40 | 3.34e-03 | 3.17E-12 | no |
| C | 5 | GO:0044434 | chloroplast part | 12/200 | 2.17 | 4.00e-03 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 52/200 | 1.39 | 4.20e-03 | - | no |
| C | 4 | GO:0044435 | plastid part | 12/200 | 2.11 | 4.99e-03 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 48/200 | 1.38 | 6.50e-03 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | no |
| M | 5 | GO:0015075 | ion transmembrane transporter activity | 14/200 | 4.47 | 7.11e-07 | - | yes |
| M | 3 | GO:0016491 | oxidoreductase activity | 23/200 | 2.73 | 4.29e-06 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 15/200 | 3.40 | 1.05e-05 | - | yes |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 15/200 | 2.90 | 7.00e-05 | - | yes |
| M | 3 | GO:0022857 | transmembrane transporter activity | 15/200 | 2.67 | 1.82e-04 | - | yes |
| M | 5 | GO:0046872 | metal ion binding | 26/200 | 1.92 | 4.99e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 26/200 | 1.81 | 1.17e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 26/200 | 1.81 | 1.17e-03 | 2.65E-15 | no |
| PS | 3 | PO:0009005 | root | 131/200 | 1.46 | 1.60e-09 | 1.43E-16 | no |
| PS | 5 | PO:0008037 | seedling | 128/200 | 1.45 | 4.92e-09 | 3.80E-11 | no |
| PS | 4 | PO:0009025 | leaf | 127/200 | 1.38 | 2.07e-07 | 4.19E-17 | no |
| PS | 4 | PO:0020030 | cotyledon | 106/200 | 1.44 | 9.16e-07 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 115/200 | 1.40 | 1.19e-06 | - | no |
| PS | 4 | PO:0009009 | embryo | 128/200 | 1.32 | 2.75e-06 | - | no |
| PS | 3 | PO:0009010 | seed | 128/200 | 1.31 | 6.10e-06 | - | no |
| PS | 4 | PO:0009001 | fruit | 128/200 | 1.30 | 8.46e-06 | - | no |
| PS | 3 | PO:0006342 | infructescence | 128/200 | 1.30 | 8.46e-06 | - | no |
| PS | 3 | PO:0006001 | phyllome | 131/200 | 1.28 | 1.70e-05 | - | no |
| PS | 3 | PO:0009006 | shoot | 136/200 | 1.25 | 2.77e-05 | 4.18E-15 | no |
| PS | 5 | PO:0020038 | petiole | 101/200 | 1.33 | 1.28e-04 | - | no |
| PS | 4 | PO:0009047 | stem | 109/200 | 1.29 | 1.70e-04 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 100/200 | 1.29 | 4.10e-04 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 103/200 | 1.23 | 2.52e-03 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 123/200 | 1.18 | 3.60e-03 | - | no |
| PS | 5 | PO:0009046 | flower | 122/200 | 1.17 | 4.24e-03 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 107/200 | 1.19 | 6.46e-03 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 111/200 | 1.18 | 7.32e-03 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 111/200 | 1.18 | 7.32e-03 | - | no |
| PG | 5 | PO:0007133 | leaf production | 118/200 | 1.40 | 4.82e-07 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 118/200 | 1.40 | 4.88e-07 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 118/200 | 1.39 | 7.45e-07 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 102/200 | 1.33 | 1.16e-04 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 102/200 | 1.33 | 1.19e-04 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 118/200 | 1.20 | 2.47e-03 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 123/200 | 1.17 | 3.72e-03 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 119/200 | 1.17 | 6.11e-03 | - | no |
| KW | 0 | response | - | 57/200 | 3.18 | 3.50e-16 | 3.49E-15 | no |
| KW | 0 | oxidative | - | 10/200 | 7.11 | 2.00e-07 | - | no |
| KW | 0 | hypocotyl | - | 12/200 | 5.14 | 7.53e-07 | 3.80E-11 | no |
| KW | 0 | stress | - | 17/200 | 3.62 | 1.32e-06 | 7.86E-16 | no |
| KW | 0 | phosphate | - | 13/200 | 4.29 | 2.55e-06 | 0 | yes |
| KW | 0 | membrane | - | 49/200 | 1.84 | 6.08e-06 | 3.64E-21 | yes |
| KW | 0 | vacuole | - | 12/200 | 3.81 | 1.94e-05 | 5.23E-15 | no |
| KW | 0 | transmembrane | - | 19/200 | 2.62 | 4.47e-05 | 0 | yes |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | system | - | 42/200 | 1.73 | 1.22e-04 | 2.91E-15 | no |
| KW | 0 | leaves | - | 14/200 | 2.83 | 1.50e-04 | 9.21E-17 | no |
| KW | 0 | electron | - | 11/200 | 3.09 | 2.68e-04 | - | no |
| KW | 0 | process | - | 36/200 | 1.76 | 2.84e-04 | 5.23E-15 | no |
| KW | 0 | biosynthetic | - | 17/200 | 2.38 | 3.24e-04 | - | no |
| KW | 0 | visible | - | 11/200 | 2.97 | 3.83e-04 | 5.23E-15 | no |
| KW | 0 | plasma | - | 23/200 | 2.01 | 5.12e-04 | 3.64E-21 | no |
| KW | 0 | endomembrane | - | 39/200 | 1.65 | 5.86e-04 | - | no |
| KW | 0 | putative | - | 38/200 | 1.65 | 7.17e-04 | 3.17E-12 | no |
| KW | 0 | transport | - | 20/200 | 2.06 | 7.94e-04 | 8.46E-16 | yes |
| KW | 0 | terminal | - | 32/200 | 1.66 | 1.57e-03 | 3.17E-12 | no |
| KW | 0 | carrier | - | 10/200 | 2.49 | 2.50e-03 | 4.26E-16 | no |
| KW | 0 | class | - | 13/200 | 2.17 | 2.96e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 4.18E-15 | yes |
| KW | 0 | synthase | - | 10/200 | 2.28 | 4.91e-03 | 3.17E-12 | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | 3.80E-11 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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