ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT5G46590.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u524659001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G36740.1 | 0.89357 | ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) | - | - | - | - |
| AT3G01840.1 | 0.886235 | protein kinase family protein | - | - | - | - |
| AT3G07960.1 | 0.883189 | phosphatidylinositol-4-phosphate 5-kinase family protein | OMAT3P002880 | - | - | - |
| AT3G13890.1 | 0.88047 | ATMYB26 (MYB DOMAIN PROTEIN 26) | - | - | - | - |
| AT5G04347.1 | 0.877436 | LOCATED IN: endomembrane system | - | - | - | - |
| AT3G24230.1 | 0.873683 | pectate lyase family protein | - | - | - | - |
| AT2G35210.1 | 0.870421 | RPA (ROOT AND POLLEN ARFGAP) | OMAT2P008770 | - | - | - |
| AT3G23890.1 | 0.868291 | TOPII (TOPOISOMERASE II) | OMAT3P009080 | - | - | - |
| AT3G55290.1 | 0.867848 | short-chain dehydrogenase/reductase (SDR) family protein | - | - | - | - |
| AT1G78955.1 | 0.867438 | CAMS1 (Camelliol C synthase 1) | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G30852.1 | -0.792598 | transposable element gene | - | - | - | - |
| AT2G10350.1 | -0.693941 | transposable element gene | - | - | - | - |
| AT1G58265.1 | -0.667202 | cytochrome P450-related | - | - | - | - |
| AT1G41910.1 | -0.661587 | transposable element gene | - | - | - | - |
| AT1G35860.1 | -0.657819 | TOC75-I (translocon outer membrane complex 75-I) | - | - | - | - |
| AT1G26350.1 | -0.653277 | unknown protein | - | - | - | - |
| AT1G63900.1 | -0.649077 | zinc finger (C3HC4-type RING finger) family protein | - | - | - | - |
| AT2G12380.1 | -0.640627 | transposable element gene | - | - | - | - |
| AT5G54700.1 | -0.635464 | ankyrin repeat family protein | - | - | - | - |
| AT3G11900.1 | -0.625761 | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) | OMAT3P004170 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 9.41e-10 | :20 terms with high significance | |
| 9.41e-10 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0009908 | flower development | 10/200 | 5.49 | 2.53e-06 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 25/200 | 2.35 | 2.36e-05 | - | yes |
| B | 4 | GO:0006629 | lipid metabolic process | 14/200 | 3.22 | 3.56e-05 | - | no |
| B | 4 | GO:0044255 | cellular lipid metabolic process | 10/200 | 3.72 | 9.16e-05 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 14/200 | 2.87 | 1.28e-04 | - | no |
| B | 3 | GO:0022414 | reproductive process | 16/200 | 2.66 | 1.28e-04 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 15/200 | 2.72 | 1.46e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 19/200 | 2.12 | 6.93e-04 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 14/200 | 2.37 | 9.61e-04 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 16/200 | 1.78 | 9.08e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 54/200 | 2.22 | 3.25e-09 | - | no |
| C | 3 | GO:0044464 | cell part | 119/200 | 1.30 | 3.43e-05 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 38/200 | 2.43 | 9.17e-08 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 11/200 | 2.47 | 1.85e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 11/200 | 2.45 | 2.00e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 17/200 | 2.02 | 2.12e-03 | - | no |
| M | 3 | GO:0016740 | transferase activity | 26/200 | 1.59 | 6.91e-03 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 18/200 | 1.73 | 8.32e-03 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 16/200 | 1.76 | 9.90e-03 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 153/200 | 1.46 | 4.59e-13 | - | yes |
| PS | 5 | PO:0009046 | flower | 152/200 | 1.46 | 7.52e-13 | - | yes |
| PS | 3 | PO:0009006 | shoot | 156/200 | 1.44 | 7.63e-13 | - | yes |
| PS | 3 | PO:0009031 | sepal | 139/200 | 1.50 | 7.40e-12 | - | yes |
| PS | 3 | PO:0009032 | petal | 131/200 | 1.49 | 1.97e-10 | - | no |
| PS | 3 | PO:0006001 | phyllome | 144/200 | 1.40 | 6.62e-10 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 134/200 | 1.42 | 4.61e-09 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 134/200 | 1.42 | 4.61e-09 | - | yes |
| PS | 4 | PO:0009001 | fruit | 126/200 | 1.28 | 3.00e-05 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 126/200 | 1.28 | 3.00e-05 | - | yes |
| PS | 3 | PO:0009010 | seed | 125/200 | 1.28 | 4.05e-05 | - | yes |
| PS | 4 | PO:0009009 | embryo | 122/200 | 1.26 | 1.16e-04 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 102/200 | 1.25 | 1.21e-03 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 102/200 | 1.23 | 2.58e-03 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 43/200 | 1.48 | 2.99e-03 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 108/200 | 1.20 | 4.29e-03 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 145/200 | 1.50 | 1.34e-12 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 148/200 | 1.41 | 9.81e-11 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 143/200 | 1.40 | 9.41e-10 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 137/200 | 1.39 | 1.34e-08 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 126/200 | 1.39 | 1.42e-07 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 123/200 | 1.37 | 9.73e-07 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 110/200 | 1.34 | 2.44e-05 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 46/200 | 1.57 | 5.72e-04 | - | no |
| KW | 0 | anthesis | - | 60/200 | 4.57 | 6.46e-25 | - | no |
| KW | 0 | stage | - | 64/200 | 3.31 | 4.12e-19 | - | no |
| KW | 0 | globular | - | 28/200 | 7.46 | 1.60e-17 | - | no |
| KW | 0 | differentiation | - | 53/200 | 3.51 | 7.65e-17 | - | no |
| KW | 0 | petal | - | 52/200 | 3.56 | 7.87e-17 | - | no |
| KW | 0 | expansion | - | 52/200 | 3.54 | 1.08e-16 | - | no |
| KW | 0 | mature | - | 37/200 | 4.14 | 3.57e-14 | - | no |
| KW | 0 | pollen | - | 34/200 | 3.81 | 4.11e-12 | - | no |
| KW | 0 | germinated | - | 26/200 | 4.70 | 1.23e-11 | - | no |
| KW | 0 | system | - | 56/200 | 2.31 | 3.51e-10 | - | no |
| KW | 0 | endomembrane | - | 55/200 | 2.33 | 4.10e-10 | - | no |
| KW | 0 | sepal | - | 13/200 | 6.02 | 4.38e-08 | - | no |
| KW | 0 | metabolic | - | 30/200 | 2.61 | 4.62e-07 | - | no |
| KW | 0 | flower | - | 22/200 | 2.88 | 2.74e-06 | - | no |
| KW | 0 | catalytic | - | 26/200 | 2.56 | 3.71e-06 | - | no |
| KW | 0 | process | - | 40/200 | 1.95 | 1.19e-05 | - | no |
| KW | 0 | inhibitor | - | 11/200 | 3.68 | 5.27e-05 | - | no |
| KW | 0 | embryo | - | 18/200 | 2.59 | 7.68e-05 | - | no |
| KW | 0 | development | - | 18/200 | 2.58 | 8.12e-05 | - | yes |
| KW | 0 | terminal | - | 36/200 | 1.87 | 8.37e-05 | - | no |
| KW | 0 | expanded | - | 13/200 | 2.98 | 1.40e-04 | - | no |
| KW | 0 | protease | - | 11/200 | 3.29 | 1.51e-04 | - | no |
| KW | 0 | region | - | 28/200 | 1.94 | 2.61e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | - | no |
| KW | 0 | glycosyl | - | 12/200 | 2.81 | 3.91e-04 | - | no |
| KW | 0 | cotyledon | - | 13/200 | 2.47 | 8.96e-04 | - | no |
| KW | 0 | peptidase | - | 10/200 | 2.51 | 2.36e-03 | - | no |
| KW | 0 | oxidoreductase | - | 11/200 | 2.36 | 2.70e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | associated | - | 14/200 | 2.05 | 3.80e-03 | - | no |
| KW | 0 | synthase | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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