ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT5G63620.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u526362001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G63790.1 | 0.96165 | ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) | OMAT5P117325 | - | OMAT5P019560 | - |
| AT3G15070.1 | 0.948778 | zinc finger (C3HC4-type RING finger) family protein | OMAT3P105050 | - | - | - |
| AT5G08790.1 | 0.927696 | ATAF2 | OMAT5P102460 | - | - | - |
| AT4G28300.1 | 0.913779 | hydroxyproline-rich glycoprotein family protein | OMAT4P009140 | - | - | - |
| AT3G49800.1 | 0.909596 | BSD domain-containing protein | OMAT3P111510 | - | OMAT3P013200 | - |
| AT1G55830.1 | 0.908531 | unknown protein | - | - | - | - |
| AT2G06025.1 | 0.907902 | GCN5-related N-acetyltransferase (GNAT) family protein | OMAT2P001360 | - | - | - |
| AT2G02730.1 | 0.907181 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G49448.1 | 0.902795 | CPuORF4 (Conserved peptide upstream open reading frame 4) | OMAT5P014110 | - | OMAT5P112620 | - |
| AT5G49450.1 | 0.902795 | AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1) | OMAT5P014110 | - | OMAT5P112620 | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G16640.1 | -0.749959 | pentatricopeptide (PPR) repeat-containing protein | - | - | - | - |
| AT5G35601.1 | -0.744607 | pseudogene, cytoplasmic aconitate hydratase, similar to cytoplasmic aconitate hydratase | - | - | - | - |
| AT1G44100.1 | -0.708665 | AAP5 | OMAT1P111170 | - | - | - |
| AT3G49510.1 | -0.707086 | F-box family protein | - | - | - | - |
| AT1G09625.1 | -0.704885 | unknown protein | - | - | - | - |
| ath-MIR865 | -0.699884 | ath-MIR865 | - | - | - | - |
| AT5G15833.1 | -0.699884 | MIR865a | - | - | - | - |
| AT5G47360.1 | -0.699712 | pentatricopeptide (PPR) repeat-containing protein | - | - | - | - |
| AT5G63540.2 | -0.699525 | unknown protein | - | - | - | - |
| AT3G42203.1 | -0.698802 | transposable element gene | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.02e-15 | :20 terms with high significance | |
| 1.02e-15 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006950 | response to stress | 31/200 | 2.50 | 7.83e-07 | - | no |
| B | 4 | GO:0006970 | response to osmotic stress | 12/200 | 4.78 | 1.68e-06 | - | no |
| B | 5 | GO:0009651 | response to salt stress | 11/200 | 4.79 | 3.92e-06 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 15/200 | 2.87 | 8.01e-05 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 15/200 | 2.74 | 1.38e-04 | - | no |
| B | 3 | GO:0051707 | response to other organism | 11/200 | 3.28 | 1.54e-04 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 11/200 | 3.04 | 3.07e-04 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 23/200 | 2.02 | 4.75e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 21/200 | 2.07 | 5.45e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 21/200 | 1.99 | 9.09e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 20/200 | 2.03 | 9.27e-04 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 21/200 | 1.97 | 1.06e-03 | - | no |
| B | 4 | GO:0044248 | cellular catabolic process | 10/200 | 2.77 | 1.09e-03 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 20/200 | 1.99 | 1.15e-03 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 20/200 | 1.99 | 1.18e-03 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 20/200 | 1.99 | 1.18e-03 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 15/200 | 2.24 | 1.19e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 21/200 | 1.94 | 1.28e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 20/200 | 1.96 | 1.44e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 21/200 | 1.92 | 1.49e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 22/200 | 1.87 | 1.68e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 12/200 | 2.33 | 2.17e-03 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 17/200 | 2.00 | 2.32e-03 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 26/200 | 1.70 | 2.75e-03 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 11/200 | 2.33 | 3.03e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 11/200 | 2.31 | 3.25e-03 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 31/200 | 1.56 | 4.64e-03 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 30/200 | 1.54 | 6.35e-03 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 24/200 | 1.60 | 8.50e-03 | - | no |
| C | 5 | GO:0005634 | nucleus | 27/200 | 1.73 | 1.93e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 20/200 | 1.98 | 1.26e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | 0 | no |
| M | 3 | GO:0016740 | transferase activity | 26/200 | 1.59 | 6.91e-03 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 35/200 | 1.48 | 7.01e-03 | - | no |
| M | 3 | GO:0005515 | protein binding | 25/200 | 1.60 | 7.41e-03 | 0 | no |
| M | 5 | GO:0046872 | metal ion binding | 22/200 | 1.62 | 9.34e-03 | - | yes |
| PS | 4 | PO:0009047 | stem | 154/200 | 1.83 | 1.98e-24 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 151/200 | 1.80 | 9.23e-23 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 138/200 | 1.88 | 3.98e-21 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 153/200 | 1.70 | 2.17e-20 | - | yes |
| PS | 3 | PO:0009005 | root | 152/200 | 1.69 | 8.64e-20 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 161/200 | 1.57 | 1.82e-18 | - | yes |
| PS | 4 | PO:0009025 | leaf | 151/200 | 1.64 | 3.96e-18 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 137/200 | 1.76 | 4.89e-18 | - | yes |
| PS | 3 | PO:0009013 | meristem | 137/200 | 1.71 | 1.36e-16 | - | yes |
| PS | 5 | PO:0020038 | petiole | 132/200 | 1.73 | 3.13e-16 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 133/200 | 1.72 | 3.77e-16 | - | yes |
| PS | 3 | PO:0009006 | shoot | 162/200 | 1.49 | 4.91e-16 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 138/200 | 1.67 | 4.97e-16 | - | yes |
| PS | 3 | PO:0009031 | sepal | 147/200 | 1.59 | 1.02e-15 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 138/200 | 1.64 | 2.97e-15 | - | yes |
| PS | 5 | PO:0008037 | seedling | 142/200 | 1.61 | 3.78e-15 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 157/200 | 1.50 | 4.04e-15 | - | yes |
| PS | 4 | PO:0009001 | fruit | 150/200 | 1.53 | 2.07e-14 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 150/200 | 1.53 | 2.07e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 155/200 | 1.49 | 2.37e-14 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 135/200 | 1.63 | 2.80e-14 | - | yes |
| PS | 4 | PO:0009009 | embryo | 147/200 | 1.52 | 1.05e-13 | - | yes |
| PS | 3 | PO:0009010 | seed | 148/200 | 1.51 | 1.20e-13 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 144/200 | 1.53 | 2.64e-13 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 144/200 | 1.53 | 2.64e-13 | - | yes |
| PS | 3 | PO:0009032 | petal | 137/200 | 1.56 | 5.06e-13 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 133/200 | 1.55 | 6.18e-12 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 128/200 | 1.57 | 7.86e-12 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 62/200 | 2.13 | 9.07e-10 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 64/200 | 1.97 | 9.97e-09 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 64/200 | 1.97 | 9.97e-09 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 142/200 | 1.68 | 5.97e-17 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 134/200 | 1.74 | 7.50e-17 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 134/200 | 1.74 | 7.91e-17 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 153/200 | 1.58 | 1.14e-16 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 140/200 | 1.66 | 3.37e-16 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 140/200 | 1.66 | 3.44e-16 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 157/200 | 1.50 | 4.40e-15 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 154/200 | 1.51 | 7.93e-15 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 150/200 | 1.52 | 3.09e-14 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 133/200 | 1.62 | 9.60e-14 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 133/200 | 1.60 | 2.68e-13 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 132/200 | 1.60 | 3.95e-13 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 139/200 | 1.54 | 7.30e-13 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 139/200 | 1.54 | 1.09e-12 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 124/200 | 1.56 | 6.58e-11 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 62/200 | 2.12 | 1.12e-09 | - | no |
| KW | 0 | stress | - | 17/200 | 3.62 | 1.32e-06 | - | no |
| KW | 0 | transcription | - | 33/200 | 2.27 | 2.98e-06 | - | no |
| KW | 0 | processes | - | 12/200 | 3.96 | 1.29e-05 | - | no |
| KW | 0 | transferring | - | 12/200 | 3.60 | 3.45e-05 | - | no |
| KW | 0 | groups | - | 11/200 | 3.37 | 1.21e-04 | - | no |
| KW | 0 | response | - | 32/200 | 1.78 | 4.60e-04 | - | no |
| KW | 0 | nucleus | - | 25/200 | 1.94 | 5.26e-04 | - | no |
| KW | 0 | cellular_component | - | 68/200 | 1.40 | 8.04e-04 | - | no |
| KW | 0 | finger | - | 19/200 | 2.05 | 1.04e-03 | - | no |
| KW | 0 | containing | - | 29/200 | 1.74 | 1.22e-03 | 7.00E-160 | yes |
| KW | 0 | dependent | - | 24/200 | 1.79 | 1.96e-03 | 1.00E-27 | no |
| KW | 0 | transferase | - | 13/200 | 2.12 | 3.66e-03 | - | no |
| KW | 0 | factor | - | 27/200 | 1.54 | 9.02e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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