ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)

AT5G67330.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u526733001000i

AT5G67330.1(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT5G38860.10.922772BIM3 (BES1-interacting Myc-like protein 3)----
AT5G08470.10.886022PEX1 (peroxisome 1)OMAT5P002960---
AT1G09665.10.885466Toll-Interleukin-Resistance (TIR) domain-containing protein--OMAT1P103040-
AT3G55520.10.878896immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeOMAT3P015340---
AT1G73875.10.876858endonuclease/exonuclease/phosphatase family proteinOMAT1P021430---
AT5G13070.10.876668MSF1-like family proteinOMAT5P004330---
AT1G33200.10.873598transposable element gene----
AT3G56510.10.873359TBP-binding protein, putative----
AT4G06551.10.872749transposable element gene----
AT3G43654.10.872072transposable element gene----
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT1G27700.1-0.910264protein bindingOMAT1P108690---
AT1G19835.1-0.888339unknown proteinOMAT1P106380---
AT3G06650.1-0.859477ACLB-1----
AT4G32410.1-0.859149CESA1 (CELLULOSE SYNTHASE 1)OMAT4P109240-OMAT4P010860-
AT2G35880.1-0.85552FUNCTIONS IN: molecular_function unknownOMAT2P108110---
AT3G16630.1-0.847493KINESIN-13AOMAT3P105630---
AT5G18500.1-0.842443protein kinase family proteinOMAT5P006380-OMAT5P105410-
AT5G64740.1-0.838847CESA6 (CELLULOSE SYNTHASE 6)OMAT5P019930---
AT3G24550.1-0.832232ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)OMAT3P009250---
AT3G05490.1-0.830025RALFL22 (ralf-like 22)OMAT3P001900---

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
B4GO:0048608reproductive structure development12/2002.461.34e-03-no
B3GO:0048856anatomical structure development18/2002.011.70e-03-no
B3GO:0022414reproductive process13/2002.163.12e-03-no
B3GO:0003006reproductive developmental process12/2002.183.82e-03-no
B3GO:0007275multicellular organismal development19/2001.795.05e-03-no
B3GO:0009791post-embryonic development12/2002.036.85e-03-no
C5GO:0005634nucleus32/2002.053.55e-05-no
C3GO:0043229intracellular organelle64/2001.391.45e-03-yes
C3GO:0005622intracellular71/2001.332.15e-038.12E-16yes
C4GO:0043231intracellular membrane-bounded organelle60/2001.373.03e-03-yes
C3GO:0043227membrane-bounded organelle60/2001.373.04e-03-yes
C3GO:0044424intracellular part67/2001.314.37e-03-yes
C5GO:0005739mitochondrion13/2002.035.27e-03-no
C3GO:0043234protein complex13/2001.996.37e-039.31E-11no
PS5PO:0009027megasporophyll120/2001.439.55e-08-yes
PS5PO:0009052pedicel117/2001.441.19e-07-yes
PS5PO:0020038petiole111/2001.461.90e-07-yes
PS4PO:0000037shoot apex120/2001.394.65e-07-yes
PS4PO:0009047stem117/2001.391.17e-06-yes
PS5PO:0020039leaf lamina115/2001.401.19e-06-yes
PS3PO:0009013meristem112/2001.392.16e-069.31E-11yes
PS5PO:0009028microsporophyll115/2001.373.24e-06-yes
PS5PO:0000013cauline leaf108/2001.403.65e-06-yes
PS4PO:0009026sporophyll121/2001.343.74e-06-yes
PS4PO:0000230inflorescence meristem108/2001.394.97e-06-yes
PS3PO:0020091male gametophyte113/2001.366.51e-06-yes
PS4PO:0020030cotyledon103/2001.407.00e-064.99E-18yes
PS5PO:0008034leaf whorl123/2001.301.63e-05-yes
PS4PO:0008033phyllome whorl123/2001.301.63e-05-yes
PS3PO:0009032petal116/2001.322.02e-05-yes
PS4PO:0009025leaf119/2001.294.52e-054.19E-17yes
PS3PO:0009005root116/2001.298.22e-058.00E-81yes
PS5PO:0008037seedling114/2001.299.57e-052.45E-10yes
PS3PO:0009031sepal118/2001.281.02e-04-yes
PS4PO:0006345pollen tube48/2001.651.38e-04-no
PS3PO:0000084sperm cell52/2001.601.45e-04-no
PS3PO:0020097generative cell52/2001.601.45e-04-no
PS3PO:0006001phyllome127/2001.241.83e-04-yes
PS4PO:0009001fruit122/2001.242.94e-045.45E-17yes
PS3PO:0006342infructescence122/2001.242.94e-04-yes
PS4PO:0009009embryo120/2001.243.44e-042.90E-16yes
PS3PO:0009010seed121/2001.243.81e-043.72E-17yes
PS5PO:0009046flower126/2001.216.66e-041.14E-17yes
PS4PO:0009049inflorescence126/2001.209.02e-04-yes
PS3PO:0009006shoot129/2001.191.33e-031.15E-17yes
PG5PO:0001081F mature embryo stage119/2001.505.64e-09-yes
PG5PO:0001078E expanded cotyledon stage121/2001.462.01e-08-yes
PG5PO:0004507D bilateral stage119/2001.445.91e-08-yes
PG5PO:0001185C globular stage114/2001.391.83e-06-yes
PG3PO:0001170seed development stages122/2001.352.56e-06-yes
PG4PO:0007631embryo development stages121/2001.343.87e-06-yes
PG5PO:0007133leaf production115/2001.373.88e-06-yes
PG4PO:00071121 main shoot growth115/2001.373.93e-06-yes
PG4PO:00010544 leaf senescence stage107/2001.395.61e-06-yes
PG3PO:0001050leaf development stages107/2001.395.77e-06-yes
PG3PO:0007134A vegetative growth115/2001.365.80e-069.31E-11yes
PG5PO:0007605androecium developmental stages51/2001.741.84e-05-no
PG4PO:00076164 anthesis124/2001.284.45e-05-yes
PG5PO:0007604corolla developmental stages123/2001.252.10e-04-yes
PG4PO:00076003 floral organ development stages126/2001.242.22e-04-yes
PG3PO:0007615flower development stages128/2001.223.37e-04-yes
KW0nucleus-26/2002.022.25e-04-no
KW0nucleotide-15/2002.367.11e-042.45E-10no
KW0nucleic-15/2002.299.44e-049.31E-11no
KW0mitochondrion-12/2002.193.68e-03-no
KW0development-14/2002.014.60e-032.18E-15no
KW0complex-16/2001.895.17e-039.31E-11no
KW0value-27/2001.615.24e-03-no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

AT5G67330.1

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • with_OMAT_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.850326
description
http://purl.org/dc/elements/1.1/description
  • AT5G67330.1(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT5G38860.10.922772BIM3 (BES1-interacting Myc-like protein 3)----
    AT5G08470.10.886022PEX1 (peroxisome 1)OMAT5P002960---
    AT1G09665.10.885466Toll-Interleukin-Resistance (TIR) domain-containing protein--OMAT1P103040-
    AT3G55520.10.878896immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeOMAT3P015340---
    AT1G73875.10.876858endonuclease/exonuclease/phosphatase family proteinOMAT1P021430---
    AT5G13070.10.876668MSF1-like family proteinOMAT5P004330---
    AT1G33200.10.873598transposable element gene----
    AT3G56510.10.873359TBP-binding protein, putative----
    AT4G06551.10.872749transposable element gene----
    AT3G43654.10.872072transposable element gene----
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT1G27700.1-0.910264protein bindingOMAT1P108690---
    AT1G19835.1-0.888339unknown proteinOMAT1P106380---
    AT3G06650.1-0.859477ACLB-1----
    AT4G32410.1-0.859149CESA1 (CELLULOSE SYNTHASE 1)OMAT4P109240-OMAT4P010860-
    AT2G35880.1-0.85552FUNCTIONS IN: molecular_function unknownOMAT2P108110---
    AT3G16630.1-0.847493KINESIN-13AOMAT3P105630---
    AT5G18500.1-0.842443protein kinase family proteinOMAT5P006380-OMAT5P105410-
    AT5G64740.1-0.838847CESA6 (CELLULOSE SYNTHASE 6)OMAT5P019930---
    AT3G24550.1-0.832232ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)OMAT3P009250---
    AT3G05490.1-0.830025RALFL22 (ralf-like 22)OMAT3P001900---

    Get whole results

    Over-Representation Analysis Result

    p-value <= 1.00e-06:20 terms with high significance
    1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    B4GO:0048608reproductive structure development12/2002.461.34e-03-no
    B3GO:0048856anatomical structure development18/2002.011.70e-03-no
    B3GO:0022414reproductive process13/2002.163.12e-03-no
    B3GO:0003006reproductive developmental process12/2002.183.82e-03-no
    B3GO:0007275multicellular organismal development19/2001.795.05e-03-no
    B3GO:0009791post-embryonic development12/2002.036.85e-03-no
    C5GO:0005634nucleus32/2002.053.55e-05-no
    C3GO:0043229intracellular organelle64/2001.391.45e-03-yes
    C3GO:0005622intracellular71/2001.332.15e-038.12E-16yes
    C4GO:0043231intracellular membrane-bounded organelle60/2001.373.03e-03-yes
    C3GO:0043227membrane-bounded organelle60/2001.373.04e-03-yes
    C3GO:0044424intracellular part67/2001.314.37e-03-yes
    C5GO:0005739mitochondrion13/2002.035.27e-03-no
    C3GO:0043234protein complex13/2001.996.37e-039.31E-11no
    PS5PO:0009027megasporophyll120/2001.439.55e-08-yes
    PS5PO:0009052pedicel117/2001.441.19e-07-yes
    PS5PO:0020038petiole111/2001.461.90e-07-yes
    PS4PO:0000037shoot apex120/2001.394.65e-07-yes
    PS4PO:0009047stem117/2001.391.17e-06-yes
    PS5PO:0020039leaf lamina115/2001.401.19e-06-yes
    PS3PO:0009013meristem112/2001.392.16e-069.31E-11yes
    PS5PO:0009028microsporophyll115/2001.373.24e-06-yes
    PS5PO:0000013cauline leaf108/2001.403.65e-06-yes
    PS4PO:0009026sporophyll121/2001.343.74e-06-yes
    PS4PO:0000230inflorescence meristem108/2001.394.97e-06-yes
    PS3PO:0020091male gametophyte113/2001.366.51e-06-yes
    PS4PO:0020030cotyledon103/2001.407.00e-064.99E-18yes
    PS5PO:0008034leaf whorl123/2001.301.63e-05-yes
    PS4PO:0008033phyllome whorl123/2001.301.63e-05-yes
    PS3PO:0009032petal116/2001.322.02e-05-yes
    PS4PO:0009025leaf119/2001.294.52e-054.19E-17yes
    PS3PO:0009005root116/2001.298.22e-058.00E-81yes
    PS5PO:0008037seedling114/2001.299.57e-052.45E-10yes
    PS3PO:0009031sepal118/2001.281.02e-04-yes
    PS4PO:0006345pollen tube48/2001.651.38e-04-no
    PS3PO:0000084sperm cell52/2001.601.45e-04-no
    PS3PO:0020097generative cell52/2001.601.45e-04-no
    PS3PO:0006001phyllome127/2001.241.83e-04-yes
    PS4PO:0009001fruit122/2001.242.94e-045.45E-17yes
    PS3PO:0006342infructescence122/2001.242.94e-04-yes
    PS4PO:0009009embryo120/2001.243.44e-042.90E-16yes
    PS3PO:0009010seed121/2001.243.81e-043.72E-17yes
    PS5PO:0009046flower126/2001.216.66e-041.14E-17yes
    PS4PO:0009049inflorescence126/2001.209.02e-04-yes
    PS3PO:0009006shoot129/2001.191.33e-031.15E-17yes
    PG5PO:0001081F mature embryo stage119/2001.505.64e-09-yes
    PG5PO:0001078E expanded cotyledon stage121/2001.462.01e-08-yes
    PG5PO:0004507D bilateral stage119/2001.445.91e-08-yes
    PG5PO:0001185C globular stage114/2001.391.83e-06-yes
    PG3PO:0001170seed development stages122/2001.352.56e-06-yes
    PG4PO:0007631embryo development stages121/2001.343.87e-06-yes
    PG5PO:0007133leaf production115/2001.373.88e-06-yes
    PG4PO:00071121 main shoot growth115/2001.373.93e-06-yes
    PG4PO:00010544 leaf senescence stage107/2001.395.61e-06-yes
    PG3PO:0001050leaf development stages107/2001.395.77e-06-yes
    PG3PO:0007134A vegetative growth115/2001.365.80e-069.31E-11yes
    PG5PO:0007605androecium developmental stages51/2001.741.84e-05-no
    PG4PO:00076164 anthesis124/2001.284.45e-05-yes
    PG5PO:0007604corolla developmental stages123/2001.252.10e-04-yes
    PG4PO:00076003 floral organ development stages126/2001.242.22e-04-yes
    PG3PO:0007615flower development stages128/2001.223.37e-04-yes
    KW0nucleus-26/2002.022.25e-04-no
    KW0nucleotide-15/2002.367.11e-042.45E-10no
    KW0nucleic-15/2002.299.44e-049.31E-11no
    KW0mitochondrion-12/2002.193.68e-03-no
    KW0development-14/2002.014.60e-032.18E-15no
    KW0complex-16/2001.895.17e-039.31E-11no
    KW0value-27/2001.615.24e-03-no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • AT5G67330.1
attributionURL
http://creativecommons.org/ns#attributionURL
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
ARTADE2_Gene (Ver.20100511)
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s5i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i

AT5G67330.1

Genes with tiling-array support (Annotated)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • with_OMAT_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.850326
label
http://www.w3.org/2000/01/rdf-schema#label
  • AT5G67330.1
attributionURL
http://creativecommons.org/ns#attributionURL
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
ARTADE2_Gene (Ver.20100511)
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s5i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i