OMAT1P108780http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101087800000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P015600 | 0.859174 | - | AT5G53360 | seven in absentia (SINA) family protein | - | - |
| OMAT2P001570 | 0.858648 | - | AT2G12550 | ubiquitin-associated (UBA)/TS-N domain-containing protein | - | - |
| OMAT2P012220 | 0.851405 | - | AT2G44200 | unknown protein | - | - |
| OMAT3P102900 | 0.841491 | - | AT3G09100 | mRNA capping enzyme family protein | - | - |
| OMAT3P113020 | 0.841275 | - | AT3G54290 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT2P012400 | 0.839321 | - | AT2G44530 | ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative | - | - |
| OMAT5P101000 | 0.837198 | - | AT5G04090 | unknown protein | - | - |
| OMAT2P110140 | 0.832852 | - | AT2G40770 | ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding | - | - |
| OMAT5P018620 | 0.828663 | - | AT5G61140 | DEAD box RNA helicase, putative | - | - |
| OMAT4P106480 | 0.827799 | - | AT4G24200 | LOCATED IN: mitochondrion | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P002950 | -0.706787 | - | - | - | AT2G18540 | cupin family protein |
| OMAT4P104140 | -0.673896 | - | - | - | AT4G16980 | arabinogalactan-protein family |
| OMAT2P008530 | -0.672611 | - | AT2G34460 | flavin reductase-related | - | - |
| OMAT2P100520 | -0.654052 | - | AT2G02500 | ISPD | - | - |
| OMAT4P102870 | -0.652765 | - | - | - | AT4G13340 | leucine-rich repeat family protein / extensin family protein |
| OMAT5P102440 | -0.652101 | - | AT5G08740 | NDC1 (NAD(P)H dehydrogenase C1) | - | - |
| OMAT1P112110 | -0.64507 | - | AT1G49730 | protein kinase family protein | - | - |
| OMAT1P114290 | -0.642821 | - | AT1G58080 | ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1) | - | - |
| OMAT5P019360 | -0.642791 | - | - | - | AT5G63180 | pectate lyase family protein |
| OMAT5P103630 | -0.640446 | - | AT5G13120 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.95e-21 | :20 terms with high significance | |
| 4.95e-21 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 27/201 | 2.45 | 5.42e-06 | - | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 33/201 | 2.18 | 6.96e-06 | - | yes |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 25/201 | 2.48 | 9.56e-06 | - | yes |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 25/201 | 2.46 | 1.14e-05 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 35/201 | 2.06 | 1.31e-05 | - | yes |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 24/201 | 2.42 | 2.07e-05 | - | yes |
| B | 3 | GO:0019222 | regulation of metabolic process | 27/201 | 2.28 | 2.07e-05 | - | yes |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 25/201 | 2.36 | 2.23e-05 | - | yes |
| B | 3 | GO:0050789 | regulation of biological process | 35/201 | 2.01 | 2.24e-05 | - | yes |
| B | 5 | GO:0010468 | regulation of gene expression | 25/201 | 2.33 | 2.73e-05 | - | yes |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 24/201 | 2.38 | 2.84e-05 | - | yes |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 24/201 | 2.38 | 2.84e-05 | - | yes |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 25/201 | 2.30 | 3.48e-05 | - | yes |
| B | 5 | GO:0006350 | transcription | 24/201 | 2.34 | 3.69e-05 | - | yes |
| B | 5 | GO:0016070 | RNA metabolic process | 21/201 | 2.46 | 5.06e-05 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 37/201 | 1.89 | 5.08e-05 | - | yes |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/201 | 1.86 | 7.71e-05 | - | yes |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 14/201 | 2.67 | 2.83e-04 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 29/201 | 1.89 | 3.15e-04 | - | yes |
| B | 5 | GO:0032774 | RNA biosynthetic process | 14/201 | 2.54 | 4.63e-04 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 32/201 | 1.48 | 9.49e-03 | - | yes |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 32/201 | 1.47 | 9.91e-03 | - | yes |
| C | 5 | GO:0005634 | nucleus | 31/201 | 1.97 | 9.33e-05 | 3.64E-21 | no |
| C | 3 | GO:0005622 | intracellular | 72/201 | 1.35 | 1.54e-03 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 66/201 | 1.29 | 7.69e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 37/201 | 2.66 | 1.37e-08 | - | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 50/201 | 2.10 | 9.33e-08 | - | yes |
| M | 3 | GO:0003700 | transcription factor activity | 26/201 | 2.56 | 3.62e-06 | - | yes |
| M | 3 | GO:0005515 | protein binding | 28/201 | 1.78 | 1.02e-03 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 10/201 | 2.24 | 5.63e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 10/201 | 2.21 | 6.02e-03 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 157/201 | 2.01 | 9.74e-31 | - | yes |
| PS | 3 | PO:0009013 | meristem | 159/201 | 1.97 | 2.49e-30 | - | yes |
| PS | 4 | PO:0009047 | stem | 159/201 | 1.88 | 1.61e-27 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 148/201 | 1.91 | 1.24e-24 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 152/201 | 1.80 | 5.84e-23 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 149/201 | 1.82 | 1.12e-22 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 151/201 | 1.79 | 2.22e-22 | - | yes |
| PS | 3 | PO:0009032 | petal | 154/201 | 1.75 | 5.23e-22 | - | yes |
| PS | 4 | PO:0009025 | leaf | 157/201 | 1.70 | 2.17e-21 | - | yes |
| PS | 3 | PO:0009031 | sepal | 157/201 | 1.69 | 3.77e-21 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 154/201 | 1.70 | 1.26e-20 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 150/201 | 1.73 | 1.86e-20 | - | yes |
| PS | 5 | PO:0008037 | seedling | 152/201 | 1.71 | 2.15e-20 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 146/201 | 1.75 | 7.26e-20 | - | yes |
| PS | 4 | PO:0009001 | fruit | 160/201 | 1.62 | 1.09e-19 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 160/201 | 1.62 | 1.09e-19 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 145/201 | 1.75 | 1.44e-19 | - | yes |
| PS | 4 | PO:0009009 | embryo | 158/201 | 1.63 | 2.15e-19 | - | yes |
| PS | 3 | PO:0009010 | seed | 159/201 | 1.62 | 2.39e-19 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 135/201 | 1.83 | 4.44e-19 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 155/201 | 1.64 | 7.61e-19 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 155/201 | 1.64 | 7.61e-19 | - | yes |
| PS | 3 | PO:0009005 | root | 150/201 | 1.66 | 2.95e-18 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 163/201 | 1.55 | 3.55e-18 | - | yes |
| PS | 3 | PO:0009006 | shoot | 166/201 | 1.52 | 5.25e-18 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 160/201 | 1.55 | 1.81e-17 | - | yes |
| PS | 5 | PO:0009046 | flower | 161/201 | 1.54 | 2.67e-17 | - | yes |
| PS | 5 | PO:0020038 | petiole | 130/201 | 1.70 | 5.76e-15 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 66/201 | 2.02 | 1.85e-09 | - | no |
| PS | 3 | PO:0020097 | generative cell | 66/201 | 2.02 | 1.85e-09 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 49/201 | 1.67 | 7.89e-05 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 152/201 | 1.82 | 1.48e-23 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 151/201 | 1.82 | 2.67e-23 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 150/201 | 1.82 | 7.48e-23 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 147/201 | 1.84 | 1.66e-22 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 151/201 | 1.79 | 3.22e-22 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 151/201 | 1.79 | 3.30e-22 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 151/201 | 1.77 | 7.37e-22 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 155/201 | 1.71 | 3.19e-21 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 142/201 | 1.84 | 4.67e-21 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 142/201 | 1.84 | 4.95e-21 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 155/201 | 1.71 | 5.37e-21 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 160/201 | 1.61 | 1.75e-19 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 158/201 | 1.62 | 3.33e-19 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 162/201 | 1.58 | 5.08e-19 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 162/201 | 1.54 | 1.56e-17 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 52/201 | 1.77 | 1.00e-05 | - | no |
| KW | 0 | transcription | - | 38/201 | 2.60 | 1.53e-08 | - | yes |
| KW | 0 | factor | - | 39/201 | 2.22 | 7.09e-07 | - | yes |
| KW | 0 | ipr013083 | - | 12/201 | 3.81 | 1.93e-05 | - | no |
| KW | 0 | regulation | - | 28/201 | 2.11 | 6.23e-05 | - | yes |
| KW | 0 | dependent | - | 28/201 | 2.08 | 7.85e-05 | - | no |
| KW | 0 | nucleus | - | 24/201 | 1.85 | 1.26e-03 | 3.64E-21 | no |
| KW | 0 | nucleotide | - | 14/201 | 2.19 | 2.05e-03 | - | no |
| KW | 0 | finger | - | 18/201 | 1.94 | 2.60e-03 | 0 | yes |
| KW | 0 | cellular_component | - | 65/201 | 1.33 | 4.06e-03 | - | no |
| KW | 0 | region | - | 24/201 | 1.65 | 5.58e-03 | - | no |
| KW | 0 | terminal | - | 30/201 | 1.55 | 5.98e-03 | - | no |
| KW | 0 | ubiquitin | - | 10/201 | 2.21 | 6.02e-03 | - | no |
| KW | 0 | containing | - | 26/201 | 1.55 | 9.40e-03 | 2.00E-30 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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