OMAT5P018240http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u500182400000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P009640 | 0.996212 | - | AT1G27080 | NRT1.6 (NITRATE TRANSPORTER 1.6) | - | - |
| OMAT1P016972 | 0.995022 | - | AT1G62333 | unknown protein | - | - |
| OMAT5P110880 | 0.992618 | - | AT5G44360 | FAD-binding domain-containing protein | - | - |
| OMAT5P108420 | 0.990822 | - | AT5G28910 | unknown protein | - | - |
| OMAT5P013320 | 0.988012 | - | AT5G47150 | YDG/SRA domain-containing protein | - | - |
| OMAT1P008570 | 0.986903 | - | AT1G23200 | pectinesterase family protein | - | - |
| OMAT3P004800 | 0.986212 | - | AT3G13540 | ATMYB5 (MYB DOMAIN PROTEIN 5) | - | - |
| OMAT4P111290 | 0.985456 | - | AT4G37360 | CYP81D2 | - | - |
| OMAT5P002400 | 0.98493 | - | AT5G07210 | ARR21 (ARABIDOPSIS RESPONSE REGULATOR 21) | - | - |
| OMAT3P011090 | 0.984805 | - | AT3G29810 | COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P111120 | -0.742811 | - | AT3G48560 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) | - | - |
| OMAT2P005910 | -0.734016 | - | AT2G27050 | EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) | - | - |
| OMAT3P103750 | -0.733479 | - | AT3G11450 | DNAJ heat shock N-terminal domain-containing protein / cell division protein-related | - | - |
| OMAT5P103400 | -0.729541 | - | AT5G12120 | ubiquitin-associated (UBA)/TS-N domain-containing protein | - | - |
| OMAT2P102300 | -0.728638 | - | AT2G17510 | EMB2763 (EMBRYO DEFECTIVE 2763) | AT2G17500 | auxin efflux carrier family protein |
| OMAT2P106630 | -0.722911 | - | AT2G31400,AT2G31410 | [AT2G31400]pentatricopeptide (PPR) repeat-containing protein, [AT2G31410]unknown protein | - | - |
| OMAT5P111590 | -0.718268 | - | AT5G46190 | KH domain-containing protein | - | - |
| OMAT3P111655 | -0.710498 | - | AT3G50370 | unknown protein | - | - |
| OMAT1P102990 | -0.706601 | - | AT1G09620 | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding | - | - |
| OMAT3P109030 | -0.697577 | - | AT3G27390 | unknown protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006629 | lipid metabolic process | 14/200 | 3.22 | 3.56e-05 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 15/200 | 2.88 | 7.70e-05 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 22/200 | 2.19 | 1.92e-04 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 22/200 | 2.19 | 1.92e-04 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 22/200 | 2.17 | 2.17e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 21/200 | 2.13 | 3.76e-04 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 21/200 | 2.09 | 4.76e-04 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 22/200 | 2.03 | 5.43e-04 | - | no |
| B | 5 | GO:0006350 | transcription | 21/200 | 2.06 | 6.04e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 21/200 | 1.99 | 9.09e-04 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 21/200 | 1.98 | 1.02e-03 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 21/200 | 1.97 | 1.06e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 21/200 | 1.92 | 1.49e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 22/200 | 1.87 | 1.68e-03 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 11/200 | 2.42 | 2.18e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 17/200 | 1.90 | 3.97e-03 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 17/200 | 1.89 | 4.13e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 11/200 | 2.10 | 6.63e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 11/200 | 2.01 | 9.43e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 11/200 | 2.00 | 9.82e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 58/200 | 2.39 | 4.24e-11 | - | yes |
| C | 3 | GO:0044464 | cell part | 128/200 | 1.40 | 6.72e-08 | - | yes |
| M | 5 | GO:0004091 | carboxylesterase activity | 10/200 | 4.99 | 6.22e-06 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 25/200 | 2.48 | 9.90e-06 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 18/200 | 2.13 | 8.56e-04 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 14/200 | 2.36 | 1.00e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 25/200 | 1.80 | 1.47e-03 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 27/200 | 1.73 | 1.90e-03 | - | no |
| KW | 0 | system | - | 60/200 | 2.48 | 3.73e-12 | - | yes |
| KW | 0 | endomembrane | - | 58/200 | 2.45 | 1.39e-11 | - | yes |
| KW | 0 | glycosyl | - | 20/200 | 4.69 | 2.34e-09 | - | no |
| KW | 0 | lipid | - | 17/200 | 4.95 | 1.34e-08 | - | no |
| KW | 0 | differentiation | - | 37/200 | 2.45 | 1.17e-07 | - | no |
| KW | 0 | hydrolase | - | 23/200 | 3.15 | 3.45e-07 | - | no |
| KW | 0 | stage | - | 41/200 | 2.12 | 1.19e-06 | - | no |
| KW | 0 | petal | - | 34/200 | 2.33 | 1.19e-06 | - | no |
| KW | 0 | globular | - | 15/200 | 4.00 | 1.37e-06 | - | no |
| KW | 0 | expansion | - | 34/200 | 2.31 | 1.41e-06 | - | no |
| KW | 0 | inhibitor | - | 13/200 | 4.35 | 2.17e-06 | - | no |
| KW | 0 | development | - | 21/200 | 3.01 | 2.19e-06 | - | no |
| KW | 0 | anthesis | - | 30/200 | 2.28 | 7.45e-06 | - | no |
| KW | 0 | meristem | - | 10/200 | 4.36 | 2.18e-05 | - | no |
| KW | 0 | process | - | 38/200 | 1.86 | 6.18e-05 | - | no |
| KW | 0 | metabolic | - | 25/200 | 2.18 | 8.65e-05 | - | no |
| KW | 0 | member | - | 24/200 | 2.19 | 1.06e-04 | - | no |
| KW | 0 | electron | - | 11/200 | 3.09 | 2.68e-04 | - | no |
| KW | 0 | conserved | - | 26/200 | 1.92 | 4.79e-04 | - | no |
| KW | 0 | flower | - | 17/200 | 2.23 | 7.06e-04 | - | no |
| KW | 0 | regulation | - | 25/200 | 1.89 | 7.54e-04 | - | no |
| KW | 0 | carrier | - | 11/200 | 2.74 | 7.70e-04 | - | no |
| KW | 0 | transcription | - | 26/200 | 1.79 | 1.37e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | - | no |
| KW | 0 | factor | - | 29/200 | 1.66 | 2.57e-03 | - | no |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | embryo | - | 14/200 | 2.02 | 4.43e-03 | - | no |
| KW | 0 | catalytic | - | 18/200 | 1.77 | 6.72e-03 | - | no |
| KW | 0 | oxidoreductase | - | 10/200 | 2.15 | 7.56e-03 | - | no |
| KW | 0 | encodes | - | 37/200 | 1.45 | 7.61e-03 | - | no |
| KW | 0 | dependent | - | 22/200 | 1.64 | 8.03e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
