OMAT5P115120http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501151200000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P111880 | 0.903091 | - | AT5G47370 | HAT2 | - | - |
| OMAT3P110190 | 0.899723 | - | AT3G45300 | IVD (ISOVALERYL-COA-DEHYDROGENASE) | - | - |
| OMAT5P115250 | 0.892269 | - | AT5G57890 | anthranilate synthase beta subunit, putative | - | - |
| OMAT3P102655 | 0.890503 | - | - | - | AT3G07650 | COL9 (CONSTANS-LIKE 9) |
| OMAT1P109010 | 0.890432 | - | AT1G28480 | GRX480 | - | - |
| OMAT2P106820 | 0.887124 | - | AT2G32020 | GCN5-related N-acetyltransferase (GNAT) family protein | - | - |
| OMAT4P104540 | 0.882339 | - | AT4G18230 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P105160 | 0.881054 | - | AT3G15440 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P007430 | 0.873832 | - | - | - | - | - |
| OMAT5P115140 | 0.873571 | - | AT5G57650 | eukaryotic translation initiation factor-related | AT5G57640 | FUNCTIONS IN: molecular_function unknown |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P001210 | -0.648735 | - | AT5G04060 | dehydration-responsive protein-related | - | - |
| OMAT4P009250 | -0.645269 | - | AT4G28480 | DNAJ heat shock family protein | - | - |
| OMAT1P007150 | -0.641164 | - | AT1G19480 | HhH-GPD base excision DNA repair family protein | - | - |
| OMAT3P017360 | -0.638637 | - | AT3G61240 | DEAD/DEAH box helicase, putative (RH12) | - | - |
| OMAT1P016640 | -0.632183 | - | AT1G61240 | unknown protein | - | - |
| OMAT3P000730 | -0.6321 | - | AT3G02600 | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) | - | - |
| OMAT1P101370 | -0.630228 | - | AT1G05150 | calcium-binding EF hand family protein | - | - |
| OMAT4P002630 | -0.62991 | - | AT4G10750 | HpcH/HpaI aldolase family protein | - | - |
| OMAT4P013690 | -0.622949 | - | AT4G39361,AtU14a,AtsnoR99,AtU14b,AT4G39363,AT4G39364,AtU14c,AtU14d,AT4G39366 | [AT4G39361]snoRNA, [AtU14a]AtU14a, [AtsnoR99]AtsnoR99, [AtU14b]AtU14b, [AT4G39363]snoRNA, [AT4G39364]snoRNA, [AtU14c]AtU14c, [AtU14d]AtU14d, [AT4G39366]snoRNA | - | - |
| OMAT1P007590 | -0.621343 | - | AT1G20696 | HMGB3 (HIGH MOBILITY GROUP B 3) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.50e-14 | :20 terms with high significance | |
| 1.50e-14 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0009628 | response to abiotic stimulus | 26/200 | 3.51 | 7.25e-09 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 32/200 | 2.81 | 3.68e-08 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 31/200 | 2.83 | 4.84e-08 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 29/200 | 2.94 | 5.55e-08 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 30/200 | 2.85 | 6.92e-08 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 29/200 | 2.89 | 8.13e-08 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 29/200 | 2.89 | 8.45e-08 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 29/200 | 2.89 | 8.45e-08 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 30/200 | 2.82 | 9.02e-08 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 29/200 | 2.86 | 1.01e-07 | - | no |
| B | 5 | GO:0006350 | transcription | 29/200 | 2.84 | 1.20e-07 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 30/200 | 2.77 | 1.24e-07 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 44/200 | 2.22 | 1.26e-07 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 43/200 | 2.21 | 1.96e-07 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 31/200 | 2.63 | 2.52e-07 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 19/200 | 3.64 | 3.46e-07 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 19/200 | 3.47 | 7.21e-07 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 21/200 | 3.14 | 1.10e-06 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 37/200 | 2.14 | 3.22e-06 | - | yes |
| B | 3 | GO:0050794 | regulation of cellular process | 34/200 | 2.23 | 3.27e-06 | - | yes |
| B | 3 | GO:0009719 | response to endogenous stimulus | 17/200 | 3.30 | 4.89e-06 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 33/200 | 2.20 | 6.22e-06 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 12/200 | 4.17 | 7.36e-06 | - | no |
| B | 4 | GO:0009314 | response to radiation | 12/200 | 4.04 | 1.04e-05 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 35/200 | 2.07 | 1.17e-05 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 22/200 | 2.59 | 1.56e-05 | - | no |
| B | 3 | GO:0006950 | response to stress | 27/200 | 2.18 | 4.71e-05 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 69/200 | 1.46 | 1.79e-04 | - | yes |
| B | 4 | GO:0009725 | response to hormone stimulus | 13/200 | 2.75 | 3.14e-04 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 46/200 | 1.58 | 5.06e-04 | - | yes |
| B | 3 | GO:0023033 | signaling pathway | 10/200 | 2.96 | 6.43e-04 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 44/200 | 1.56 | 8.36e-04 | - | yes |
| B | 3 | GO:0044238 | primary metabolic process | 68/200 | 1.37 | 1.29e-03 | - | yes |
| B | 3 | GO:0051716 | cellular response to stimulus | 11/200 | 2.49 | 1.75e-03 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 51/200 | 1.45 | 1.90e-03 | - | yes |
| B | 4 | GO:0010467 | gene expression | 33/200 | 1.62 | 2.00e-03 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 34/200 | 1.58 | 2.76e-03 | - | yes |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 34/200 | 1.57 | 2.90e-03 | - | yes |
| B | 5 | GO:0006796 | phosphate metabolic process | 14/200 | 2.11 | 2.92e-03 | - | yes |
| B | 4 | GO:0006793 | phosphorus metabolic process | 14/200 | 2.11 | 2.95e-03 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 53/200 | 1.37 | 5.16e-03 | - | yes |
| C | 5 | GO:0005634 | nucleus | 36/200 | 2.30 | 7.76e-07 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 70/200 | 1.59 | 8.09e-06 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 70/200 | 1.59 | 8.13e-06 | - | no |
| C | 3 | GO:0005622 | intracellular | 80/200 | 1.50 | 1.31e-05 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 70/200 | 1.52 | 4.65e-05 | - | no |
| C | 3 | GO:0044424 | intracellular part | 74/200 | 1.45 | 1.13e-04 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 41/200 | 4.06 | 2.61e-15 | - | no |
| M | 4 | GO:0003677 | DNA binding | 43/200 | 3.10 | 5.66e-12 | 8.00E-25 | no |
| M | 3 | GO:0003676 | nucleic acid binding | 51/200 | 2.15 | 2.96e-08 | - | no |
| M | 3 | GO:0016740 | transferase activity | 32/200 | 1.96 | 8.45e-05 | - | yes |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 20/200 | 2.18 | 3.70e-04 | - | yes |
| M | 5 | GO:0046872 | metal ion binding | 26/200 | 1.92 | 4.99e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 26/200 | 1.81 | 1.17e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 26/200 | 1.81 | 1.17e-03 | 8.00E-25 | no |
| M | 5 | GO:0016301 | kinase activity | 17/200 | 2.11 | 1.27e-03 | - | yes |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 12/200 | 1.93 | 9.97e-03 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 147/200 | 1.75 | 2.86e-20 | - | yes |
| PS | 4 | PO:0009047 | stem | 147/200 | 1.74 | 5.59e-20 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 135/200 | 1.84 | 2.25e-19 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 149/200 | 1.66 | 5.06e-18 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 159/200 | 1.55 | 2.85e-17 | - | yes |
| PS | 4 | PO:0009025 | leaf | 149/200 | 1.62 | 5.30e-17 | - | yes |
| PS | 3 | PO:0009006 | shoot | 162/200 | 1.49 | 4.91e-16 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 137/200 | 1.66 | 1.62e-15 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 132/200 | 1.70 | 2.06e-15 | - | yes |
| PS | 5 | PO:0009046 | flower | 156/200 | 1.50 | 7.06e-15 | - | yes |
| PS | 5 | PO:0020038 | petiole | 129/200 | 1.69 | 9.93e-15 | - | yes |
| PS | 5 | PO:0008037 | seedling | 141/200 | 1.60 | 1.20e-14 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 156/200 | 1.49 | 1.38e-14 | - | yes |
| PS | 3 | PO:0009013 | meristem | 133/200 | 1.66 | 1.44e-14 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 129/200 | 1.67 | 3.60e-14 | - | yes |
| PS | 3 | PO:0009031 | sepal | 142/200 | 1.54 | 3.17e-13 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 143/200 | 1.52 | 7.79e-13 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 143/200 | 1.52 | 7.79e-13 | - | yes |
| PS | 4 | PO:0009009 | embryo | 143/200 | 1.48 | 7.74e-12 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 130/200 | 1.55 | 1.53e-11 | - | yes |
| PS | 3 | PO:0009010 | seed | 143/200 | 1.46 | 2.45e-11 | - | yes |
| PS | 4 | PO:0009001 | fruit | 143/200 | 1.45 | 3.95e-11 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 143/200 | 1.45 | 3.95e-11 | - | yes |
| PS | 3 | PO:0009005 | root | 134/200 | 1.49 | 1.03e-10 | - | yes |
| PS | 3 | PO:0009032 | petal | 131/200 | 1.49 | 1.97e-10 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 122/200 | 1.50 | 2.05e-09 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 126/200 | 1.46 | 4.07e-09 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 122/200 | 1.47 | 8.34e-09 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 141/200 | 1.66 | 2.04e-16 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 140/200 | 1.66 | 3.37e-16 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 140/200 | 1.66 | 3.44e-16 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 156/200 | 1.49 | 1.50e-14 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 149/200 | 1.54 | 1.53e-14 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 129/200 | 1.68 | 2.46e-14 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 129/200 | 1.68 | 2.58e-14 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 152/200 | 1.49 | 8.43e-14 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 148/200 | 1.50 | 3.00e-13 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 123/200 | 1.50 | 1.66e-09 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 121/200 | 1.47 | 1.19e-08 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 128/200 | 1.42 | 2.15e-08 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 128/200 | 1.42 | 2.95e-08 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 118/200 | 1.42 | 2.08e-07 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 108/200 | 1.36 | 1.70e-05 | - | no |
| KW | 0 | transcription | - | 50/200 | 3.44 | 1.39e-15 | - | no |
| KW | 0 | factor | - | 46/200 | 2.63 | 2.91e-10 | - | no |
| KW | 0 | nucleus | - | 35/200 | 2.71 | 2.01e-08 | - | no |
| KW | 0 | response | - | 41/200 | 2.29 | 1.55e-07 | - | no |
| KW | 0 | regulation | - | 33/200 | 2.50 | 3.61e-07 | - | no |
| KW | 0 | dependent | - | 29/200 | 2.17 | 2.84e-05 | 6.00E-39 | no |
| KW | 0 | stress | - | 14/200 | 2.98 | 8.33e-05 | 5.00E-46 | no |
| KW | 0 | light | - | 10/200 | 3.74 | 8.63e-05 | - | no |
| KW | 0 | induced | - | 10/200 | 3.65 | 1.07e-04 | 2.00E-19 | no |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | ipr000719 | - | 14/200 | 2.25 | 1.59e-03 | - | yes |
| KW | 0 | ipr011009 | - | 14/200 | 2.17 | 2.27e-03 | - | yes |
| KW | 0 | amino | - | 17/200 | 1.97 | 2.66e-03 | - | yes |
| KW | 0 | class | - | 13/200 | 2.17 | 2.96e-03 | - | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | yes |
| KW | 0 | encodes | - | 38/200 | 1.49 | 4.43e-03 | - | no |
| KW | 0 | region | - | 24/200 | 1.66 | 5.24e-03 | - | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | - | yes |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | 9.00E-106 | yes |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | - | no |
| KW | 0 | phosphorylation | - | 12/200 | 1.95 | 9.24e-03 | - | yes |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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