Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT3G19615.1	0.960195	unknown protein	OMAT3P106500	-	-	-
AT2G24100.1	0.958873	unknown protein	OMAT2P004930	-	-	-
AT1G47056.1	0.954047	VFB1 (VIER F-BOX PROTEINE 1)	OMAT1P111440	-	-	-
AT2G38820.2	0.946738	unknown protein	OMAT2P010170	-	OMAT2P109380	-
AT5G64750.1	0.943817	ABR1 (ABA REPRESSOR1)	OMAT5P019940	-	-	-
AT5G67190.1	0.942681	AP2 domain-containing transcription factor, putative	OMAT5P118500	-	-	-
AT3G10020.1	0.940027	unknown protein	OMAT3P103230	-	OMAT3P003480	-
AT1G48840.1	0.938756	unknown protein	OMAT1P013410	-	-	-
AT1G16840.4	0.932259	unknown protein	OMAT1P105500	-	-	-
AT1G67920.1	0.930624	unknown protein	OMAT1P019020	-	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
AT5G66607.1	-0.828683	unknown protein	-	-	-	-
AT5G57460.1	-0.798735	unknown protein	OMAT5P017200	-	-	-
AT1G48230.1	-0.794029	phosphate translocator-related	OMAT1P013210	-	-	-
AT1G30890.1	-0.785351	integral membrane HRF1 family protein	OMAT1P010890	-	-	-
AT5G65620.1	-0.784669	peptidase M3 family protein / thimet oligopeptidase family protein	OMAT5P020270	-	-	-
AT2G30460.1	-0.784411	FUNCTIONS IN: molecular_function unknown	-	-	-	-
AT5G50180.1	-0.778828	protein kinase, putative	OMAT5P014410	-	-	-
AT2G38650.1	-0.772794	GAUT7 (GALACTURONOSYLTRANSFERASE 7)	OMAT2P109290	-	-	-
AT2G47170.1	-0.769669	ARF1A1C	OMAT2P013510	-	-	-
AT2G01720.1	-0.769512	ribophorin I family protein	OMAT2P100300	-	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 9.10e-09	:20 terms with high significance
9.10e-09 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	5	GO:0051252	regulation of RNA metabolic process	16/200	3.06	2.24e-05	-	no
B	5	GO:0032774	RNA biosynthetic process	16/200	2.92	4.05e-05	-	no
B	5	GO:0010556	regulation of macromolecule biosynthetic process	22/200	2.23	1.45e-04	-	no
B	5	GO:0019219	regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	22/200	2.19	1.88e-04	-	no
B	5	GO:0031326	regulation of cellular biosynthetic process	22/200	2.19	1.92e-04	-	no
B	4	GO:0009889	regulation of biosynthetic process	22/200	2.19	1.92e-04	-	no
B	4	GO:0051171	regulation of nitrogen compound metabolic process	22/200	2.17	2.17e-04	-	no
B	4	GO:0031323	regulation of cellular metabolic process	23/200	2.13	2.21e-04	-	no
B	5	GO:0006350	transcription	22/200	2.16	2.42e-04	-	no
B	4	GO:0080090	regulation of primary metabolic process	22/200	2.09	3.77e-04	-	no
B	4	GO:0010033	response to organic substance	16/200	2.39	4.30e-04	-	no
B	5	GO:0010468	regulation of gene expression	22/200	2.06	4.44e-04	-	no
B	3	GO:0042221	response to chemical stimulus	23/200	2.02	4.75e-04	-	no
B	3	GO:0050794	regulation of cellular process	28/200	1.84	6.35e-04	-	no
B	4	GO:0060255	regulation of macromolecule metabolic process	22/200	2.01	6.41e-04	-	no
B	3	GO:0019222	regulation of metabolic process	23/200	1.95	7.47e-04	-	no
B	4	GO:0009725	response to hormone stimulus	12/200	2.54	1.01e-03	-	no
B	3	GO:0050789	regulation of biological process	29/200	1.68	2.16e-03	-	no
B	3	GO:0009719	response to endogenous stimulus	12/200	2.33	2.17e-03	-	no
B	5	GO:0016070	RNA metabolic process	17/200	2.00	2.32e-03	-	no
B	5	GO:0090304	nucleic acid metabolic process	25/200	1.66	4.44e-03	-	no
B	4	GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	27/200	1.60	5.58e-03	-	no
B	3	GO:0009628	response to abiotic stimulus	14/200	1.89	7.85e-03	-	no

C	5	GO:0005634	nucleus	28/200	1.79	9.33e-04	-	no

M	3	GO:0005515	protein binding	33/200	2.11	1.46e-05	-	no
M	3	GO:0003700	transcription factor activity	24/200	2.38	2.85e-05	-	no
M	4	GO:0003677	DNA binding	27/200	1.95	3.01e-04	-	no
M	5	GO:0046872	metal ion binding	24/200	1.77	2.35e-03	-	no
M	4	GO:0043169	cation binding	24/200	1.67	4.89e-03	-	no
M	3	GO:0043167	ion binding	24/200	1.67	4.89e-03	-	no
M	3	GO:0003676	nucleic acid binding	35/200	1.48	7.01e-03	-	no

PS	4	PO:0006345	pollen tube	69/200	2.37	4.24e-13	-	no
PS	4	PO:0009047	stem	133/200	1.58	1.12e-12	-	no
PS	4	PO:0020030	cotyledon	120/200	1.63	6.59e-12	-	yes
PS	3	PO:0000084	sperm cell	71/200	2.19	8.32e-12	-	no
PS	3	PO:0020097	generative cell	71/200	2.19	8.32e-12	-	no
PS	5	PO:0009028	microsporophyll	130/200	1.55	1.39e-11	-	yes
PS	5	PO:0009027	megasporophyll	130/200	1.55	1.53e-11	-	yes
PS	4	PO:0009026	sporophyll	135/200	1.50	4.03e-11	-	yes
PS	3	PO:0020091	male gametophyte	127/200	1.53	1.01e-10	-	no
PS	3	PO:0009005	root	134/200	1.49	1.03e-10	-	yes
PS	5	PO:0000013	cauline leaf	119/200	1.54	7.20e-10	-	no
PS	5	PO:0009052	pedicel	122/200	1.50	2.05e-09	-	no
PS	3	PO:0009031	sepal	133/200	1.44	2.15e-09	-	no
PS	4	PO:0000230	inflorescence meristem	118/200	1.52	2.57e-09	-	no
PS	5	PO:0020038	petiole	114/200	1.50	1.84e-08	-	no
PS	4	PO:0009025	leaf	130/200	1.41	1.94e-08	-	yes
PS	3	PO:0006001	phyllome	140/200	1.37	2.28e-08	-	yes
PS	5	PO:0008034	leaf whorl	132/200	1.40	2.47e-08	-	yes
PS	4	PO:0008033	phyllome whorl	132/200	1.40	2.47e-08	-	yes
PS	3	PO:0009013	meristem	118/200	1.47	2.52e-08	-	no
PS	5	PO:0008037	seedling	126/200	1.43	2.58e-08	-	yes
PS	5	PO:0020039	leaf lamina	120/200	1.46	2.80e-08	-	yes
PS	4	PO:0009009	embryo	133/200	1.38	6.79e-08	-	yes
PS	5	PO:0009046	flower	140/200	1.35	7.21e-08	-	yes
PS	3	PO:0009032	petal	124/200	1.41	7.69e-08	-	no
PS	4	PO:0009049	inflorescence	140/200	1.34	1.16e-07	-	yes
PS	3	PO:0009010	seed	133/200	1.36	1.70e-07	-	yes
PS	4	PO:0009001	fruit	133/200	1.35	2.47e-07	-	yes
PS	3	PO:0006342	infructescence	133/200	1.35	2.47e-07	-	yes
PS	4	PO:0000037	shoot apex	120/200	1.39	4.65e-07	-	no
PS	3	PO:0009006	shoot	141/200	1.30	8.98e-07	-	yes

PG	5	PO:0007605	androecium developmental stages	68/200	2.32	1.73e-12	-	no
PG	3	PO:0007134	A vegetative growth	129/200	1.52	8.33e-11	-	yes
PG	5	PO:0007133	leaf production	128/200	1.52	1.21e-10	-	yes
PG	4	PO:0007112	1 main shoot growth	128/200	1.52	1.24e-10	-	yes
PG	4	PO:0007616	4 anthesis	136/200	1.40	7.56e-09	-	yes
PG	5	PO:0001185	C globular stage	121/200	1.47	9.10e-09	-	no
PG	4	PO:0001054	4 leaf senescence stage	115/200	1.50	1.59e-08	-	no
PG	3	PO:0001050	leaf development stages	115/200	1.49	1.65e-08	-	no
PG	3	PO:0001170	seed development stages	128/200	1.42	2.95e-08	-	no
PG	5	PO:0001078	E expanded cotyledon stage	120/200	1.45	4.47e-08	-	no
PG	4	PO:0007631	embryo development stages	127/200	1.41	4.81e-08	-	no
PG	5	PO:0004507	D bilateral stage	118/200	1.43	1.28e-07	-	no
PG	5	PO:0007604	corolla developmental stages	134/200	1.36	1.52e-07	-	yes
PG	3	PO:0007615	flower development stages	139/200	1.33	2.68e-07	-	yes
PG	4	PO:0007600	3 floral organ development stages	136/200	1.33	3.35e-07	-	yes
PG	5	PO:0001081	F mature embryo stage	111/200	1.40	2.43e-06	-	no

KW	0	transcriptional	-	13/200	5.39	1.70e-07	-	no
KW	0	c3hc4	-	12/200	5.53	3.34e-07	-	no
KW	0	ipr013083	-	14/200	4.47	7.11e-07	-	no
KW	0	ipr001841	-	13/200	4.24	2.93e-06	-	no
KW	0	dependent	-	28/200	2.09	7.17e-05	3.00E-20	no
KW	0	finger	-	21/200	2.27	1.58e-04	-	no
KW	0	regulation	-	26/200	1.97	3.31e-04	-	no
KW	0	factor	-	31/200	1.77	6.35e-04	3.00E-10	no
KW	0	transcription	-	27/200	1.86	6.37e-04	-	no
KW	0	ipr001810	-	11/200	2.71	8.64e-04	-	no
KW	0	cyclin	-	12/200	2.57	9.12e-04	2.00E-18	no
KW	0	ubiquitin	-	11/200	2.45	2.00e-03	-	no
KW	0	ligase	-	10/200	2.56	2.02e-03	-	no
KW	0	nucleus	-	23/200	1.78	2.53e-03	-	no
KW	0	response	-	29/200	1.62	3.66e-03	-	no
KW	0	containing	-	27/200	1.62	4.73e-03	8.00E-49	no
KW	0	biological_process	-	75/200	1.25	8.35e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

Top Page

label http://www.w3.org/2000/01/rdf-schema#label