ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT4G32280.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u423228001000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G32190.1 | 0.954549 | centromeric protein-related | OMAT4P010740 | - | OMAT4P109190 | - |
| AT1G29420.1 | 0.946084 | FUNCTIONS IN: molecular_function unknown | OMAT1P109300 | - | - | - |
| AT1G09350.1 | 0.938429 | AtGolS3 (Arabidopsis thaliana galactinol synthase 3) | OMAT1P003180 | - | - | - |
| AT2G22810.1 | 0.930528 | ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) | - | - | - | - |
| AT3G05660.1 | 0.930246 | AtRLP33 (Receptor Like Protein 33) | OMAT3P101850 | - | - | - |
| AT2G42530.1 | 0.928196 | COR15B (COLD REGULATED 15B) | OMAT2P110820 | - | OMAT2P011550 | - |
| AT3G55580.1 | 0.925664 | regulator of chromosome condensation (RCC1) family protein | OMAT3P015350 | - | - | - |
| AT1G26790.1 | 0.920998 | Dof-type zinc finger domain-containing protein | OMAT1P108370 | - | - | - |
| AT1G32860.1 | 0.920393 | glycosyl hydrolase family 17 protein | OMAT1P110350 | - | - | - |
| AT4G21870.1 | 0.917928 | 26.5 kDa class P-related heat shock protein (HSP26.5-P) | OMAT4P105590 | - | OMAT4P006670 | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G43280.1 | -0.77642 | ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) | OMAT5P011970 | - | - | - |
| AT2G13300.1 | -0.669776 | transposable element gene | - | - | - | - |
| AT4G36960.1 | -0.649552 | RNA recognition motif (RRM)-containing protein | OMAT4P012740 | - | - | - |
| AT3G28620.1 | -0.635292 | zinc finger (C3HC4-type RING finger) family protein | - | - | - | - |
| AT3G42710.1 | -0.634064 | transposable element gene | - | - | - | - |
| AT5G15170.1 | -0.625005 | tyrosyl-DNA phosphodiesterase-related | - | - | - | - |
| AT2G43250.1 | -0.623801 | unknown protein | - | - | - | - |
| AT3G55600.1 | -0.622993 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G17610.1 | -0.615759 | unknown protein | OMAT5P006120 | - | - | - |
| AT3G54840.1 | -0.615695 | ARA6 | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0009733 | response to auxin stimulus | 11/200 | 6.51 | 1.56e-07 | - | yes |
| B | 3 | GO:0009719 | response to endogenous stimulus | 14/200 | 2.72 | 2.31e-04 | - | yes |
| B | 4 | GO:0009725 | response to hormone stimulus | 13/200 | 2.75 | 3.14e-04 | - | yes |
| B | 4 | GO:0010033 | response to organic substance | 15/200 | 2.24 | 1.19e-03 | - | yes |
| B | 3 | GO:0009628 | response to abiotic stimulus | 16/200 | 2.16 | 1.32e-03 | - | yes |
| B | 4 | GO:0006952 | defense response | 10/200 | 2.20 | 6.39e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 19/200 | 1.74 | 6.96e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 20/200 | 1.98 | 1.26e-03 | - | yes |
| M | 4 | GO:0003677 | DNA binding | 23/200 | 1.66 | 6.11e-03 | 5.00E-06 | yes |
| PS | 4 | PO:0020030 | cotyledon | 106/200 | 1.44 | 9.16e-07 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 109/200 | 1.41 | 1.86e-06 | - | yes |
| PS | 4 | PO:0009025 | leaf | 123/200 | 1.34 | 3.60e-06 | 4.19E-17 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 112/200 | 1.36 | 8.88e-06 | - | no |
| PS | 4 | PO:0009047 | stem | 113/200 | 1.34 | 1.65e-05 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 129/200 | 1.26 | 5.83e-05 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 115/200 | 1.28 | 1.46e-04 | - | no |
| PS | 3 | PO:0009006 | shoot | 133/200 | 1.22 | 1.65e-04 | - | yes |
| PS | 5 | PO:0008037 | seedling | 113/200 | 1.28 | 1.67e-04 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 119/200 | 1.26 | 1.71e-04 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 119/200 | 1.26 | 1.71e-04 | - | yes |
| PS | 4 | PO:0009009 | embryo | 121/200 | 1.25 | 2.02e-04 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 107/200 | 1.28 | 3.72e-04 | - | no |
| PS | 5 | PO:0020038 | petiole | 99/200 | 1.30 | 3.75e-04 | - | no |
| PS | 3 | PO:0009010 | seed | 121/200 | 1.24 | 3.81e-04 | - | no |
| PS | 4 | PO:0009001 | fruit | 121/200 | 1.23 | 4.94e-04 | - | no |
| PS | 3 | PO:0006342 | infructescence | 121/200 | 1.23 | 4.94e-04 | - | no |
| PS | 5 | PO:0009046 | flower | 126/200 | 1.21 | 6.66e-04 | - | yes |
| PS | 3 | PO:0009031 | sepal | 114/200 | 1.23 | 8.36e-04 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 126/200 | 1.20 | 9.02e-04 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 106/200 | 1.23 | 1.79e-03 | - | no |
| PS | 3 | PO:0009032 | petal | 107/200 | 1.22 | 2.36e-03 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 102/200 | 1.21 | 4.05e-03 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 94/200 | 1.21 | 7.65e-03 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 120/200 | 1.42 | 1.72e-07 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 119/200 | 1.41 | 2.34e-07 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 118/200 | 1.40 | 4.82e-07 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 106/200 | 1.38 | 1.07e-05 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 106/200 | 1.38 | 1.10e-05 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 121/200 | 1.23 | 5.97e-04 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 126/200 | 1.20 | 9.36e-04 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 122/200 | 1.20 | 1.66e-03 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 101/200 | 1.23 | 3.11e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 98/200 | 1.23 | 3.24e-03 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 115/200 | 1.19 | 4.26e-03 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 100/200 | 1.20 | 6.17e-03 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 107/200 | 1.19 | 6.58e-03 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 107/200 | 1.18 | 7.69e-03 | - | no |
| KW | 0 | responsive | - | 15/200 | 5.01 | 6.83e-08 | 1.97E-16 | no |
| KW | 0 | auxin | - | 11/200 | 4.90 | 3.07e-06 | 8.90E-18 | yes |
| KW | 0 | response | - | 34/200 | 1.90 | 9.73e-05 | 3.49E-15 | yes |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | yes |
| KW | 0 | expression | - | 13/200 | 2.69 | 3.93e-04 | - | no |
| KW | 0 | transcription | - | 24/200 | 1.65 | 5.60e-03 | 0 | yes |
| KW | 0 | regulation | - | 22/200 | 1.66 | 6.91e-03 | 1.97E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
