AT1G07940

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u10000007940i

AT1G07940

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT1G07940

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT1G07940

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr1:2462953-2465504 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u7975i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u10000007940i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT1G07940.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u10000079401i
• AT1G07940.2
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u10000079402i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL14-52-O13
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u12162i
• RAFL03-08-O03
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u296i

シロイヌナズナ変異株観察情報

http://metadb.riken.jp/db/SciNetS_ria143i/pria143u5i

• F07706_obs_3 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u8442i
• F07706_obs_4 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u1074i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• EF1A1_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2501317099i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT1P102410
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101024100000i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT1G07940.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120794001000i
• AT1G07940.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120794002000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT1G07940.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120794001000i
• AT1G07940.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u120794002000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT1G07940:has:GTP binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5302i
• AT1G07940:located in:plasma membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5299i
• AT1G07940:involved in:translational elongation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5300i
• AT1G07940:located in:plasmodesma
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5303i
• AT1G07940:functions in:calmodulin binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5304i
• AT1G07940:has:translation elongation factor activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5298i
• AT1G07940:located in:cytoplasm
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5297i
• AT1G07940:has:GTPase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5301i
• AT1G07940:located in:mitochondrion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u5305i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT1G07940:expressed during:seedling growth
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u267i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT1G07940:expressed in:guard cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u307777i
• AT1G07940:expressed in:juvenile leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u306079i
• AT1G07940:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u3664i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_001035916
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u22126i
• RAFL03-08-O03
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u48142i
• BT000595
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u12917i
• NM_100668
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u26314i

RARGE Alternative splicing

http://metadb.riken.jp/db/SciNetS_ria3i/pria3s1i

• ATU-1-0-02760
  http://metadb.riken.jp/db/SciNetS_ria3i/cria3u1ria3u1002760i

挿入cDNA　（Riken Arabidopsis Fox-hunting）

http://metadb.riken.jp/db/SciNetS_ria61i/pria61u3i

• F07706_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2077060100i
• F17706_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2177060100i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT1G07940.2
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u10000079402i
• AT1G07940.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u10000079401i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster278
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u278i

RIKEN A.thaliana gene family (tandem)

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• tandem cluster281
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s2rib123u281i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• GTP_EFTU
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u356i
• GTP_EFTU_D2
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u357i
• GTP_EFTU_D3
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1235i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog4574
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u4574i