A.thaliana locus
TAIR10 Locus
AT3G05090
http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u30000005090i
AT3G05090(TAIR10 Locus)
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AT3G05090
TAIR10 Locus
status_type
http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i
description
http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i
LATERAL ROOT STIMULATOR 1 (LRS1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: lateral root formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Protein of unknown function DUF3337 (InterPro:IPR021772), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has 59803 Blast hits to 26869 proteins in 729 species: Archae - 50; Bacteria - 7042; Metazoa - 23770; Fungi - 14096; Plants - 7202; Viruses - 3; Other Eukaryotes - 7640 (source: NCBI BLink).
label
http://www.w3.org/2000/01/rdf-schema#label
AT3G05090
attributionURL
http://creativecommons.org/ns#attributionURL
http://arabidopsis.org/servlets/TairObject?type=locus&name=AT3G05090
locus region
http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i
Chr3:1417893-1423664 -
http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u12022i
gene type
http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i
protein_coding
http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i
species
http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i
Arabidopsis thaliana
http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
http://database.riken.jp/sw/item/crib102u0rib102u30000005090i
synonym
http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i
LRS1
LATERAL ROOT STIMULATOR 1
relationship
http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i
TAIR10 Gene Model
http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i
AT3G05090.2
http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000050902i
AT3G05090.1
http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000050901i
RAFL cDNA
http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i
RAFL07-10-M21
http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u5000i
RAFL09-50-I08
http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u9290i
TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
AT3G05090.2
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320509002000i
AT3G05090.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320509001000i
Genes with tiling-array support (Annotated)
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
AT3G05090.2
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320509002000i
AT3G05090.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320509001000i
ARTADE2_Gene (Ver.20100511)
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
OMAT3P101630
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u301016300000i
TAIR によるGO注釈
http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i
AT3G05090:located in:nucleus
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78081i
AT3G05090:functions in:nucleotide binding
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78078i
AT3G05090:involved in:lateral root formation
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78080i
AT3G05090:involved in:fatty acid beta-oxidation
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78079i
AT3G05090:involved in:protein N-linked glycosylation
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78075i
AT3G05090:involved in:protein import into peroxisome matrix
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78077i
AT3G05090:located in:CUL4 RING ubiquitin ligase complex
http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u78076i
TAIRによるPO注釈（生育ステージ）
http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i
AT3G05090:expressed during:D bilateral stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u60291i
AT3G05090:expressed during:F mature embryo stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u33085i
AT3G05090:expressed during:C globular stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u46540i
AT3G05090:expressed during:E expanded cotyledon stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u19441i
AT3G05090:expressed during:LP.08 eight leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u85524i
AT3G05090:expressed during:LP.02 two leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u97731i
AT3G05090:expressed during:LP.12 twelve leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u73370i
AT3G05090:expressed during:LP.10 ten leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u110178i
AT3G05090:expressed during:LP.06 six leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u136437i
AT3G05090:expressed during:LP.04 four leaves visible
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u123246i
AT3G05090:expressed during:4 anthesis
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u167095i
AT3G05090:expressed during:petal differentiation and expansion stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u150707i
AT3G05090:expressed during:4 leaf senescence stage
http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u6154i
TAIRによるPO注釈（器官名）
http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i
AT3G05090:expressed in:carpel
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u146554i
AT3G05090:expressed in:cultured cell
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u306771i
AT3G05090:expressed in:petal
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u176152i
AT3G05090:expressed in:petiole
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u245451i
AT3G05090:expressed in:sepal
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u161098i
AT3G05090:expressed in:stamen
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u132631i
AT3G05090:expressed in:root
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u63024i
AT3G05090:expressed in:stem
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u206558i
AT3G05090:expressed in:embryo
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u90235i
AT3G05090:expressed in:shoot apex
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u23069i
AT3G05090:expressed in:cotyledon
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u233188i
AT3G05090:expressed in:leaf apex
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u272178i
AT3G05090:expressed in:inflorescence meristem
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u36867i
AT3G05090:expressed in:vascular leaf
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u118644i
AT3G05090:expressed in:flower
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u191426i
AT3G05090:expressed in:pedicel
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u220184i
AT3G05090:expressed in:collective leaf structure
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u286304i
AT3G05090:expressed in:seed
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u104652i
AT3G05090:expressed in:cauline leaf
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u9606i
AT3G05090:expressed in:shoot system
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u76659i
AT3G05090:expressed in:hypocotyl
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u258628i
AT3G05090:expressed in:leaf lamina base
http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u49629i
A.thaliana cDNA
http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i
AY142674
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u62261i
RAFL09-50-I08
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u72790i
NM_180185
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u70718i
AK226843
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u60698i
RAFL07-10-M21
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u72075i
BT000631
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u62765i
NM_111381
http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u66227i
RARGE Alternative splicing
http://metadb.riken.jp/db/SciNetS_ria3i/pria3s1i
ATU-3-0-01680
http://metadb.riken.jp/db/SciNetS_ria3i/cria3u1ria3u3001680i
AT_TAIR_gene
http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i
AT3G05090.1
http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000050901i
AT3G05090.2
http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000050902i
RIKEN A.thaliana gene family
http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i
Cluster17
http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u17i
Domain Annotation(A.thaliana)
http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i
WD40
http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u114i
RIKEN Ortholog(A.thaliana and Rice)
http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i
At-Os_Ortholog2375
http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u2375i
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