AT3G55200

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u30000055200i

AT3G55200

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (TAIR:AT3G55220.1); Has 1074 Blast hits to 953 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 406; Fungi - 248; Plants - 228; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT3G55200

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT3G55200

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr3:20460533-20464556 +
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u1159i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u30000055200i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• AtSAP130a
• SAP130a
• Arabidopsis thaliana spliceosome-associated protein 130 a
• spliceosome-associated protein 130 a

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT3G55200.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000552001i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT3G55200.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u325520001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT3G55200:located in:chloroplast
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104961i
• AT3G55200:involved in:pollen germination
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104963i
• AT3G55200:involved in:pollen development
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104964i
• AT3G55200:has:nucleic acid binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104965i
• AT3G55200:functions in:nucleic acid binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104959i
• AT3G55200:involved in:ovule development
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104962i
• AT3G55200:located in:nucleus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u104960i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT3G55200:expressed in:fruit
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312433i
• AT3G55200:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312435i
• AT3G55200:expressed in:inflorescence
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312437i
• AT3G55200:expressed in:guard cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u308687i
• AT3G55200:expressed in:leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312439i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_115378
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u69796i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT3G55200.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000552001i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster2720
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u2720i

RIKEN A.thaliana gene family (tandem)

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• tandem cluster728
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s2rib123u728i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• CPSF_A
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1945i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog1407
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u1407i