AT3G55440

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u30000055440i

AT3G55440

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT3G55440

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT3G55440

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr3:20553690-20556560 +
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u1649i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u30000055440i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• CYTOTPI
• CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE
• triosephosphate isomerase
• TPI
• CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE
• ATCTIMC

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT3G55440.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000554401i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL05-01-I24
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u1251i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• TPIS_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2540804091i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT3G55440.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u325544001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT3G55440.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u325544001000i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT3P015290
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300152900000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT3G55440:involved in:pentose-phosphate shunt
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105167i
• AT3G55440:located in:mitochondrion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105163i
• AT3G55440:involved in:response to cadmium ion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105179i
• AT3G55440:involved in:aerobic respiration
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105170i
• AT3G55440:located in:apoplast
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105194i
• AT3G55440:involved in:response to zinc ion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105175i
• AT3G55440:involved in:ubiquitin-dependent protein catabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105190i
• AT3G55440:located in:cytosol
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105166i
• AT3G55440:involved in:proteasomal ubiquitin-dependent protein catabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105182i
• AT3G55440:involved in:response to misfolded protein
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105173i
• AT3G55440:involved in:photorespiration
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105176i
• AT3G55440:located in:plasmodesma
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105196i
• AT3G55440:involved in:water transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105183i
• AT3G55440:involved in:cysteine biosynthetic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105186i
• AT3G55440:involved in:response to temperature stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105181i
• AT3G55440:located in:vacuolar membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105171i
• AT3G55440:has:triose-phosphate isomerase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105187i
• AT3G55440:located in:plasma membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105185i
• AT3G55440:located in:chloroplast stroma
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105164i
• AT3G55440:located in:chloroplast
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105184i
• AT3G55440:involved in:proteasome core complex assembly
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105180i
• AT3G55440:located in:cytoplasm
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105172i
• AT3G55440:has:catalytic activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105192i
• AT3G55440:involved in:cellular carbohydrate metabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105191i
• AT3G55440:located in:vacuole
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105178i
• AT3G55440:involved in:Golgi organization
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105165i
• AT3G55440:involved in:metabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105189i
• AT3G55440:functions in:copper ion binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105168i
• AT3G55440:involved in:hyperosmotic response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105174i
• AT3G55440:involved in:glycolysis
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105188i
• AT3G55440:involved in:gluconeogenesis
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105195i
• AT3G55440:has protein modification of type:peptidyl-cysteine S-nitrosylation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105177i
• AT3G55440:involved in:response to salt stress
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105169i
• AT3G55440:located in:cell wall
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u105193i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT3G55440:expressed during:LP.12 twelve leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u75166i
• AT3G55440:expressed during:seed development stages
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u185663i
• AT3G55440:expressed during:LP.10 ten leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u112043i
• AT3G55440:expressed during:LP.02 two leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u99554i
• AT3G55440:expressed during:LP.06 six leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u138280i
• AT3G55440:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u125282i
• AT3G55440:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u153158i
• AT3G55440:expressed during:LP.08 eight leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u87310i
• AT3G55440:expressed during:4 leaf senescence stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u8059i
• AT3G55440:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u62333i
• AT3G55440:expressed during:seedling growth
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u479i
• AT3G55440:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u21504i
• AT3G55440:expressed during:C globular stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u48556i
• AT3G55440:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u169493i
• AT3G55440:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u35065i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT3G55440:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u78549i
• AT3G55440:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u25206i
• AT3G55440:expressed in:leaf lamina base
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u51505i
• AT3G55440:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u222194i
• AT3G55440:expressed in:trichome
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u2434i
• AT3G55440:expressed in:hypocotyl
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u260717i
• AT3G55440:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u288638i
• AT3G55440:expressed in:sperm cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u303730i
• AT3G55440:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u208601i
• AT3G55440:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u106724i
• AT3G55440:expressed in:guard cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u308691i
• AT3G55440:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u163370i
• AT3G55440:expressed in:cotyledon
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u234957i
• AT3G55440:expressed in:carpel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u148597i
• AT3G55440:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u3878i
• AT3G55440:expressed in:leaf apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u274083i
• AT3G55440:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u134698i
• AT3G55440:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u38781i
• AT3G55440:expressed in:cauline leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u11512i
• AT3G55440:expressed in:fruit
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u3501i
• AT3G55440:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u92418i
• AT3G55440:expressed in:petiole
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u247295i
• AT3G55440:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u65167i
• AT3G55440:expressed in:cultured cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u1888i
• AT3G55440:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u193834i
• AT3G55440:expressed in:petal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u178325i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• AY074822
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u61525i
• U02949
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u74088i
• RAFL05-01-I24
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u71468i
• NM_115402
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u69819i

挿入cDNA　（Riken Arabidopsis Fox-hunting）

http://metadb.riken.jp/db/SciNetS_ria61i/pria61u3i

• F12818_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2128180100i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT3G55440.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000554401i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster1016
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u1016i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• TIM
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1530i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog6317
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u6317i