AT5G42360

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u50000042360i

AT5G42360

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G42350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT5G42360

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT5G42360

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr5:16936133-16938486 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u26681i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u50000042360i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT5G42360.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000423601i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL09-12-D18
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u6943i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• FK118_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2691518181i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G42360.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u524236001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT5G42360:involved in:biological_process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u161783i
• AT5G42360:located in:nucleus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u161781i
• AT5G42360:has:molecular_function
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u161782i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT5G42360:expressed during:M germinated pollen stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u184917i
• AT5G42360:expressed during:L mature pollen stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u180406i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• RAFL09-12-D18
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u52432i
• NM_123601
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u38628i
• AY143953
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u10711i

Ds Mapping Information to TAIR10

http://metadb.riken.jp/db/SciNetS_ria278i/pria278u13i

• 54-3699-1_G-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u28304i
• 54-3699-1_H-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u28305i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT5G42360.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000423601i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster7473
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u7473i

RIKEN A.thaliana gene family (tandem)

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• tandem cluster1307
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s2rib123u1307i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• Kelch_2
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u234i
• Kelch_1
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u233i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog2524
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u2524i