AT5G53300

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u50000053300i

AT5G53300

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1); Has 10679 Blast hits to 10640 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4642; Fungi - 2339; Plants - 1932; Viruses - 26; Other Eukaryotes - 1736 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT5G53300

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT5G53300

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr5:21632021-21634247 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u21733i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u50000053300i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• UBC10
• ubiquitin-conjugating enzyme 10

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT5G53300.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000533001i
• AT5G53300.2
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000533002i
• AT5G53300.3
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000533003i
• AT5G53300.4
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000533004i

RARGE Transposon Mutant

http://metadb.riken.jp/db/SciNetS_ria10i/pria10s1i

• 53-2504-1
  http://metadb.riken.jp/db/SciNetS_ria10i/cria10s1ria10u5325041i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL02-02-H09
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u23i
• RAFL02-10-N23
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u166i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• UBC10_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2530501033i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G53300.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330001000i
• AT5G53300.3
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330003000i
• AT5G53300.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330002000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G53300.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330001000i
• AT5G53300.3
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330003000i
• AT5G53300.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525330002000i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT5P113780
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501137800000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT5G53300:located in:cytoplasm
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169415i
• AT5G53300:has:ubiquitin protein ligase binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169418i
• AT5G53300:involved in:ubiquitin-dependent protein catabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169413i
• AT5G53300:located in:cellular_component
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169417i
• AT5G53300:has:acid-amino acid ligase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169414i
• AT5G53300:has:ubiquitin-protein ligase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u169416i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• AF324718
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u1309i
• RAFL02-02-H09
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u47912i
• RAFL21-76-L05
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u58173i
• DQ027024
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u20591i
• AF325005
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u1330i
• AY113937
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u8994i
• AF326872
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u1433i
• L00640
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u21933i
• AY129488
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u9947i
• NM_124709
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u39702i
• RAFL02-10-N23
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u48026i
• NM_180850
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u46529i

Ds Mapping Information to TAIR10

http://metadb.riken.jp/db/SciNetS_ria278i/pria278u13i

• 54-3411-1_H-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u28045i
• 53-2504-1_H-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u22117i
• 53-2504-1_G-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u22116i
• 54-3411-1_G-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u28044i

RARGE Alternative splicing

http://metadb.riken.jp/db/SciNetS_ria3i/pria3s1i

• ATU-5-0-14770
  http://metadb.riken.jp/db/SciNetS_ria3i/cria3u1ria3u5014770i

挿入cDNA　（Riken Arabidopsis Fox-hunting）

http://metadb.riken.jp/db/SciNetS_ria61i/pria61u3i

• F11043_2
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2110430200i
• F13251_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2132510100i
• F21736_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2217360100i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT5G53300.2
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000533002i
• AT5G53300.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000533001i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster50
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u50i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• UQ_con
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u390i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog1818
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u1818i