AT2G02820

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u20000002820i

AT2G02820

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• myb domain protein 88 (MYB88); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G14350.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT2G02820

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT2G02820

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr2:804174-807208 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u18439i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u20000002820i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• MYB88
• AtMYB88
• myb domain protein 88

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT2G02820.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u20000028201i
• AT2G02820.2
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u20000028202i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT2P100570
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u201005700000i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT2G02820.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220282002000i
• AT2G02820.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220282001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT2G02820.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220282002000i
• AT2G02820.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u220282001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT2G02820:involved in:regulation of transcription, DNA-dependent
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48049i
• AT2G02820:involved in:guard cell differentiation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48048i
• AT2G02820:located in:nucleus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48051i
• AT2G02820:has:sequence-specific DNA binding transcription factor activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48047i
• AT2G02820:functions in:DNA binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48050i
• AT2G02820:has:DNA binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u48046i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT2G02820:expressed during:LP.02 two leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u95747i
• AT2G02820:expressed during:LP.10 ten leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u108135i
• AT2G02820:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u30962i
• AT2G02820:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u164454i
• AT2G02820:expressed during:4 leaf senescence stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u4089i
• AT2G02820:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u148044i
• AT2G02820:expressed during:LP.06 six leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u134412i
• AT2G02820:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u17235i
• AT2G02820:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u58100i
• AT2G02820:expressed during:LP.08 eight leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u83561i
• AT2G02820:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u121047i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT2G02820:expressed in:leaf apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u270115i
• AT2G02820:expressed in:cauline leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u7544i
• AT2G02820:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u87888i
• AT2G02820:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u188830i
• AT2G02820:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u34777i
• AT2G02820:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u74622i
• AT2G02820:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u20788i
• AT2G02820:expressed in:cotyledon
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u231221i
• AT2G02820:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u116399i
• AT2G02820:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u60691i
• AT2G02820:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u218021i
• AT2G02820:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u283769i
• AT2G02820:expressed in:sperm cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u302064i
• AT2G02820:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u102446i
• AT2G02820:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u204350i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• AY550305
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u11535i
• AF175994
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u905i
• NM_126337
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u41274i
• BT026343
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u19515i
• NM_001035880
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u22091i

Ds Mapping Information to TAIR10

http://metadb.riken.jp/db/SciNetS_ria278i/pria278u13i

• 11-2183-1_G-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u1557i
• 13-5070-1_G-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u11879i
• 11-2183-1_H-edge.1
  http://metadb.riken.jp/db/SciNetS_ria278i/cria278u2ria278u1558i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT2G02820.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u20000028201i
• AT2G02820.2
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u20000028202i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster18
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u18i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog7000
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u7000i