AT3G11820

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u30000011820i

AT3G11820

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT3G11820

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT3G11820

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr3:3729305-3731149 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u28397i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u30000011820i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• PENETRATION1
• ATSYP121
• SYP121
• syntaxin of plants 121
• PEN1
• ATSYR1
• SYR1
• AT-SYR1
• SYNTAXIN RELATED PROTEIN 1

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT3G11820.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000118201i
• AT3G11820.2
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u30000118202i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL09-30-D21
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u8229i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• SY121_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2693528134i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT3G11820.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u321182002000i
• AT3G11820.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u321182001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT3G11820.2
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u321182002000i
• AT3G11820.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u321182001000i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT3P103910
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u301039100000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT3G11820:involved in:endoplasmic reticulum unfolded protein response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82765i
• AT3G11820:located in:cell plate
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82793i
• AT3G11820:functions in:protein binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82768i
• AT3G11820:involved in:response to bacterium
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82790i
• AT3G11820:involved in:maintenance of protein location in plasma membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82814i
• AT3G11820:involved in:regulation of multi-organism process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82788i
• AT3G11820:involved in:jasmonic acid mediated signaling pathway
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82801i
• AT3G11820:involved in:systemic acquired resistance, salicylic acid mediated signaling pathway
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82775i
• AT3G11820:involved in:amino acid import
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82773i
• AT3G11820:involved in:regulation of protein dephosphorylation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82760i
• AT3G11820:involved in:response to wounding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82806i
• AT3G11820:has:SNAP receptor activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82794i
• AT3G11820:involved in:defense response to fungus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82781i
• AT3G11820:involved in:abscisic acid mediated signaling pathway
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82805i
• AT3G11820:involved in:protein targeting to membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82779i
• AT3G11820:involved in:response to fungus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82812i
• AT3G11820:involved in:salicylic acid biosynthetic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82809i
• AT3G11820:involved in:response to external stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82802i
• AT3G11820:involved in:response to water deprivation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82776i
• AT3G11820:involved in:basic amino acid transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82784i
• AT3G11820:involved in:negative regulation of programmed cell death
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82763i
• AT3G11820:involved in:salicylic acid mediated signaling pathway
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82761i
• AT3G11820:involved in:response to auxin stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82820i
• AT3G11820:involved in:positive regulation of flavonoid biosynthetic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82780i
• AT3G11820:involved in:detection of biotic stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82799i
• AT3G11820:involved in:regulation of hydrogen peroxide metabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82786i
• AT3G11820:involved in:ammonium transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82817i
• AT3G11820:involved in:response to insect
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82769i
• AT3G11820:involved in:innate immune response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82792i
• AT3G11820:involved in:MAPKKK cascade
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82816i
• AT3G11820:involved in:defense response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82771i
• AT3G11820:involved in:regulation of stomatal movement
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82767i
• AT3G11820:involved in:response to ethylene stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82813i
• AT3G11820:involved in:negative regulation of defense response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82797i
• AT3G11820:involved in:negative regulation of cellular defense response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82795i
• AT3G11820:involved in:vesicle-mediated transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82787i
• AT3G11820:located in:plasmodesma
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82800i
• AT3G11820:involved in:transpiration
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82774i
• AT3G11820:involved in:regulation of plant-type hypersensitive response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82772i
• AT3G11820:located in:plasma membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82766i
• AT3G11820:involved in:anion transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82778i
• AT3G11820:involved in:response to jasmonic acid stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82791i
• AT3G11820:involved in:nucleotide transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82804i
• AT3G11820:involved in:cellular membrane fusion
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82808i
• AT3G11820:involved in:hyperosmotic salinity response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82811i
• AT3G11820:involved in:regulation of transcription, DNA-dependent
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82783i
• AT3G11820:involved in:response to abscisic acid stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82807i
• AT3G11820:involved in:protein targeting to plasma membrane
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82782i
• AT3G11820:involved in:defense response to bacterium
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82819i
• AT3G11820:involved in:regulation of ion transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82798i
• AT3G11820:involved in:response to other organism
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82785i
• AT3G11820:involved in:signal transduction
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82803i
• AT3G11820:constituent of:SNARE complex
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82777i
• AT3G11820:involved in:intracellular protein transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82764i
• AT3G11820:involved in:regulation of response to biotic stimulus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82762i
• AT3G11820:involved in:response to cold
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82810i
• AT3G11820:located in:trans-Golgi network
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82815i
• AT3G11820:involved in:ER to Golgi vesicle-mediated transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82770i
• AT3G11820:involved in:respiratory burst involved in defense response
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82789i
• AT3G11820:functions in:protein anchor
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82796i
• AT3G11820:involved in:response to chitin
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u82818i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT3G11820:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u151175i
• AT3G11820:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u33477i
• AT3G11820:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u123643i
• AT3G11820:expressed during:LP.10 ten leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u110541i
• AT3G11820:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u60689i
• AT3G11820:expressed during:4 leaf senescence stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u6523i
• AT3G11820:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u167559i
• AT3G11820:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u19846i
• AT3G11820:expressed during:C globular stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u46942i
• AT3G11820:expressed during:LP.06 six leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u136793i
• AT3G11820:expressed during:LP.02 two leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u98085i
• AT3G11820:expressed during:LP.12 twelve leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u73721i
• AT3G11820:expressed during:LP.08 eight leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u85863i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT3G11820:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u77032i
• AT3G11820:expressed in:petal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u176578i
• AT3G11820:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u206947i
• AT3G11820:expressed in:cauline leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u9972i
• AT3G11820:expressed in:cotyledon
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u233530i
• AT3G11820:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u220588i
• AT3G11820:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u191890i
• AT3G11820:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u119049i
• AT3G11820:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u133029i
• AT3G11820:expressed in:carpel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u146964i
• AT3G11820:expressed in:leaf lamina base
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u49997i
• AT3G11820:expressed in:leaf apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u272551i
• AT3G11820:expressed in:cultured cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u299529i
• AT3G11820:expressed in:petiole
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u245816i
• AT3G11820:expressed in:callus
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u297162i
• AT3G11820:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u90656i
• AT3G11820:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u105060i
• AT3G11820:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u63427i
• AT3G11820:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u37239i
• AT3G11820:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u161538i
• AT3G11820:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u23483i
• AT3G11820:expressed in:hypocotyl
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u259032i
• AT3G11820:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u286758i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• BT003393
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u63033i
• NM_112015
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u66839i
• NM_202559
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u71053i
• RAFL09-30-D21
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u72622i
• AF112864
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u60033i

挿入cDNA　（Riken Arabidopsis Fox-hunting）

http://metadb.riken.jp/db/SciNetS_ria61i/pria61u3i

• F18820_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2188200100i
• F28308_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2283080100i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT3G11820.2
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000118202i
• AT3G11820.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u30000118201i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster343
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u343i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• SNARE
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u236i
• Syntaxin
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u868i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog6003
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u6003i