AT4G28850

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u40000028850i

AT4G28850

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• xyloglucan endotransglucosylase/hydrolase 26 (XTH26); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 16 (TAIR:AT3G23730.1); Has 2230 Blast hits to 2210 proteins in 325 species: Archae - 0; Bacteria - 312; Metazoa - 0; Fungi - 457; Plants - 1370; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT4G28850

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT4G28850

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr4:14244295-14245957 +
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u15187i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u40000028850i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• ATXTH26
• XTH26
• xyloglucan endotransglucosylase/hydrolase 26

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT4G28850.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u40000288501i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• XTH26_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2692831312i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT4G28850.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u422885001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT4G28850:involved in:carbohydrate metabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129599i
• AT4G28850:located in:apoplast
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129596i
• AT4G28850:involved in:cellular glucan metabolic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129597i
• AT4G28850:located in:cell wall
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129594i
• AT4G28850:located in:extracellular region
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129598i
• AT4G28850:has:hydrolase activity, hydrolyzing O-glycosyl compounds
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129600i
• AT4G28850:has:xyloglucan:xyloglucosyl transferase activity
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129593i
• AT4G28850:has:hydrolase activity, acting on glycosyl bonds
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u129595i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT4G28850:expressed in:root hair
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312676i
• AT4G28850:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u297747i
• AT4G28850:expressed in:trichoblast
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u312824i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_119029
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u34406i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT4G28850.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u40000288501i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster105
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u105i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• XET_C
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u473i
• Glyco_hydro_16
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u472i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog11012
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u11012i