AT5G08430

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u50000008430i

AT5G08430

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT5G08430

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT5G08430

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr5:2716700-2720212 +
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u33446i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u50000008430i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT5G08430.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000084301i

RAFL cDNA

http://metadb.riken.jp/db/SciNetS_ria11i/pria11s1i

• RAFL09-47-K03
  http://metadb.riken.jp/db/SciNetS_ria11i/cria11s1ria11u9137i

シロイヌナズナ変異株観察情報

http://metadb.riken.jp/db/SciNetS_ria143i/pria143u5i

• F17249_obs_3 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u12943i
• F17249_obs_6 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u4220i
• F17249_obs_8 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u10591i
• F17249_obs_9 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u6039i
• F17249_obs_13 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u10307i
• F17249_obs_4 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u6229i
• F17249_obs_2 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u123i
• F17249_obs_5 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u821i
• F17249_obs_7 (FOX hunting)
  http://metadb.riken.jp/db/SciNetS_ria143i/cria143u1ria143u9504i

Swiss-Prot Plants

http://metadb.riken.jp/db/SciNetS_ria214i/pria214u4i

• Y5843_ARATH
  http://metadb.riken.jp/db/SciNetS_ria214i/cria214s6ria214u2691529092i

ARTADE2_Gene (Ver.20100511)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• OMAT5P002930
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u500029300000i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G08430.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u520843001000i

Genes with tiling-array support (Annotated)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G08430.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u520843001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT5G08430:involved in:photoperiodism, flowering
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143965i
• AT5G08430:has:DNA binding
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143961i
• AT5G08430:involved in:transcription initiation, DNA-dependent
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143967i
• AT5G08430:involved in:virus induced gene silencing
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143968i
• AT5G08430:involved in:RNA splicing, via endonucleolytic cleavage and ligation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143963i
• AT5G08430:involved in:vegetative phase change
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143960i
• AT5G08430:involved in:histone modification
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143964i
• AT5G08430:involved in:methionine biosynthetic process
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143966i
• AT5G08430:located in:nucleus
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u143962i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT5G08430:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u172909i
• AT5G08430:expressed during:LP.10 ten leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u114732i
• AT5G08430:expressed during:LP.08 eight leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u89899i
• AT5G08430:expressed during:LP.06 six leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u140955i
• AT5G08430:expressed during:M germinated pollen stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u184474i
• AT5G08430:expressed during:L mature pollen stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u180026i
• AT5G08430:expressed during:LP.12 twelve leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u77745i
• AT5G08430:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u37888i
• AT5G08430:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u128190i
• AT5G08430:expressed during:LP.02 two leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u102181i
• AT5G08430:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u24433i
• AT5G08430:expressed during:4 leaf senescence stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u10788i
• AT5G08430:expressed during:C globular stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u51466i
• AT5G08430:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u65240i
• AT5G08430:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u156645i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT5G08430:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u137605i
• AT5G08430:expressed in:hypocotyl
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u263723i
• AT5G08430:expressed in:carpel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u151551i
• AT5G08430:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u109678i
• AT5G08430:expressed in:leaf apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u276806i
• AT5G08430:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u291979i
• AT5G08430:expressed in:leaf lamina base
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u54194i
• AT5G08430:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u68213i
• AT5G08430:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u197260i
• AT5G08430:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u28244i
• AT5G08430:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u166626i
• AT5G08430:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u95539i
• AT5G08430:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u81258i
• AT5G08430:expressed in:cauline leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u14234i
• AT5G08430:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u211497i
• AT5G08430:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u123701i
• AT5G08430:expressed in:petal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u181401i
• AT5G08430:expressed in:sperm cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u304884i
• AT5G08430:expressed in:petiole
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u249927i
• AT5G08430:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u225075i
• AT5G08430:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u41510i
• AT5G08430:expressed in:cotyledon
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u237557i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_120928
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u36235i
• BT033094
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u20366i

挿入cDNA　（Riken Arabidopsis Fox-hunting）

http://metadb.riken.jp/db/SciNetS_ria61i/pria61u3i

• F17249_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2172490100i
• F10214_1
  http://metadb.riken.jp/db/SciNetS_ria61i/cria61u5ria61u2102140100i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT5G08430.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000084301i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster1028
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u1028i

Domain Annotation(A.thaliana)

http://metadb.riken.jp/db/SciNetS_rib126i/prib126u1i

• SWIB
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u219i
• GYF
  http://metadb.riken.jp/db/SciNetS_rib126i/crib126u1rib126u1132i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog12382
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u12382i

RIKEN Arabidopsis Protein record

http://metadb.riken.jp/db/SciNetS_rib46i/prib46s27i

• RIB:CRIB00046S000011-RIB00046S000000000026
  http://metadb.riken.jp/db/SciNetS_rib46i/crib46s11rib46s26i
• RIB:CRIB00046S000011-RIB00046S000000000025
  http://metadb.riken.jp/db/SciNetS_rib46i/crib46s11rib46s25i