AT5G55540

http://metadb.riken.jp/db/SciNetS_rib102i/crib102u0rib102u50000055540i

AT5G55540

TAIR10 Locus

status_type

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u5i

description

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u13i

• TORNADO 1 (TRN1); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G10510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

label

http://www.w3.org/2000/01/rdf-schema#label

• AT5G55540

attributionURL

http://creativecommons.org/ns#attributionURL

• http://arabidopsis.org/servlets/TairObject?type=locus&name=AT5G55540

locus region

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u3i

• Chr5:22496196-22500543 -
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u2rib102u3784i

gene type

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u17i

• protein_coding
  http://metadb.riken.jp/db/SciNetS_ria253i/cria253u10i

species

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u18i

• Arabidopsis thaliana
  http://metadb.riken.jp/db/SciNetS_rib166i/crib166u26rib166u3702i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib102u0rib102u50000055540i

synonym

http://metadb.riken.jp/db/SciNetS_rib99i/prib99u14i

• TORNADO 1
• LOP1
• LOPPED 1
• TRN1

relationship

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u6i

TAIR10 Gene Model

http://metadb.riken.jp/db/SciNetS_rib102i/prib102u2i

• AT5G55540.1
  http://metadb.riken.jp/db/SciNetS_rib102i/crib102u1rib102u50000555401i

表現型－遺伝子

http://metadb.riken.jp/db/SciNetS_ria224i/pria224u8i

• abnormal for trait of morphology in organ named whole plant for AT5G55540
  http://metadb.riken.jp/db/SciNetS_ria224i/cria224u3ria224u974i
• kinked for trait of morphology in organ named whole plant for AT5G55540
  http://metadb.riken.jp/db/SciNetS_ria224i/cria224u3ria224u1502i
• sterile in organ named flower for AT5G55540
  http://metadb.riken.jp/db/SciNetS_ria224i/cria224u3ria224u1650i
• dwarf in organ named whole plant for AT5G55540
  http://metadb.riken.jp/db/SciNetS_ria224i/cria224u3ria224u1334i

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i

• AT5G55540.1
  http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u525554001000i

TAIR によるGO注釈

http://metadb.riken.jp/db/SciNetS_ria269i/pria269u1i

• AT5G55540:located in:cellular_component
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170975i
• AT5G55540:involved in:meristem structural organization
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170974i
• AT5G55540:involved in:determination of bilateral symmetry
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170980i
• AT5G55540:located in:cytoplasm
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170971i
• AT5G55540:involved in:auxin polar transport
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170970i
• AT5G55540:involved in:leaf vascular tissue pattern formation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170977i
• AT5G55540:has:molecular_function
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170976i
• AT5G55540:involved in:meristem initiation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170973i
• AT5G55540:involved in:leaf morphogenesis
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170969i
• AT5G55540:involved in:meristem maintenance
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170972i
• AT5G55540:involved in:radial pattern formation
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170979i
• AT5G55540:involved in:multidimensional cell growth
  http://metadb.riken.jp/db/SciNetS_ria269i/cria269s1ria269u170978i

TAIRによるPO注釈（生育ステージ）

http://metadb.riken.jp/db/SciNetS_ria270i/pria270u1i

• AT5G55540:expressed during:LP.12 twelve leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u79558i
• AT5G55540:expressed during:D bilateral stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u67307i
• AT5G55540:expressed during:LP.04 four leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u130215i
• AT5G55540:expressed during:petal differentiation and expansion stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u159101i
• AT5G55540:expressed during:seedling growth
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u176418i
• AT5G55540:expressed during:4 anthesis
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u175331i
• AT5G55540:expressed during:LP.10 ten leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u116614i
• AT5G55540:expressed during:LP.02 two leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u104014i
• AT5G55540:expressed during:F mature embryo stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u39870i
• AT5G55540:expressed during:LP.06 six leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u142828i
• AT5G55540:expressed during:4 leaf senescence stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u12710i
• AT5G55540:expressed during:LP.08 eight leaves visible
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u91718i
• AT5G55540:expressed during:E expanded cotyledon stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u26515i
• AT5G55540:expressed during:C globular stage
  http://metadb.riken.jp/db/SciNetS_ria270i/cria270u1ria270u53567i

TAIRによるPO注釈（器官名）

http://metadb.riken.jp/db/SciNetS_ria273i/pria273u1i

• AT5G55540:expressed in:cotyledon
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u239375i
• AT5G55540:expressed in:embryo
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u97787i
• AT5G55540:expressed in:petal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u183597i
• AT5G55540:expressed in:pedicel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u227136i
• AT5G55540:expressed in:leaf mesophyll
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u296721i
• AT5G55540:expressed in:petiole
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u251788i
• AT5G55540:expressed in:leaf lamina base
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u56085i
• AT5G55540:expressed in:inflorescence meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u43439i
• AT5G55540:expressed in:collective leaf structure
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u294329i
• AT5G55540:expressed in:seed
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u111768i
• AT5G55540:expressed in:cauline leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u16152i
• AT5G55540:expressed in:shoot apical meristem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u296725i
• AT5G55540:expressed in:stem
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u213534i
• AT5G55540:expressed in:leaf apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u278734i
• AT5G55540:expressed in:flower
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u199683i
• AT5G55540:expressed in:vascular leaf
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u125789i
• AT5G55540:expressed in:shoot system
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u83163i
• AT5G55540:expressed in:root
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u70367i
• AT5G55540:expressed in:cultured cell
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u296717i
• AT5G55540:expressed in:stamen
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u139698i
• AT5G55540:expressed in:leaf primordium
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u296719i
• AT5G55540:expressed in:sepal
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u168927i
• AT5G55540:expressed in:leaf vein
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u296723i
• AT5G55540:expressed in:carpel
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u153628i
• AT5G55540:expressed in:hypocotyl
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u265813i
• AT5G55540:expressed in:shoot apex
  http://metadb.riken.jp/db/SciNetS_ria273i/cria273u1ria273u30381i

A.thaliana cDNA

http://metadb.riken.jp/db/SciNetS_ria277i/pria277u2i

• NM_124936
  http://metadb.riken.jp/db/SciNetS_ria277i/cria277u1ria277u39922i

AT_TAIR_gene

http://metadb.riken.jp/db/SciNetS_rib101i/prib101s4i

• AT5G55540.1
  http://metadb.riken.jp/db/SciNetS_rib101i/crib101u0rib101u50000555401i

RIKEN A.thaliana gene family

http://metadb.riken.jp/db/SciNetS_rib123i/prib123s1i

• Cluster5651
  http://metadb.riken.jp/db/SciNetS_rib123i/crib123s1rib123u5651i

RIKEN Ortholog(A.thaliana and Rice)

http://metadb.riken.jp/db/SciNetS_rib127i/prib127u1i

• At-Os_Ortholog8315
  http://metadb.riken.jp/db/SciNetS_rib127i/crib127u1rib127u8315i