Plant Small RNAsfamily_cluster

MIPF0000010
http://metadb.riken.jp/db/SciNetS_rib112i/crib112u3rib112u557i

MIPF0000010
UUUGGAUUGAAGGGAGCUCUA------ Arabidopsis thaliana ATH-MIR159A
UUUGGAUUGAAGGGAGCUCUU------ Arabidopsis thaliana ATH-MIR159B
-UUGGACUGAAGGGAGCUCCC---U-- Arabidopsis thaliana ATH-MIR319A/-MIR319B
UUUGGAUUGAAGGGAGCUCCU------ Arabidopsis thaliana ATH-MIR159C
-UUGGACUGAAGGGAGCUCCU---U-- Arabidopsis thaliana ATH-MIR319C
UUUGGAUUGAAGGGAGCUCUG------ Oryza sativa OSA-MIR159A/-MIR159B
AUUGGAUUGAAGGGAGCUCCA------ Oryza sativa OSA-MIR159C
AUUGGAUUGAAGGGAGCUCCG------ Oryza sativa OSA-MIR159D
AUUGGAUUGAAGGGAGCUCCU------ Oryza sativa OSA-MIR159E
CUUGGAUUGAAGGGAGCUCUA------ Oryza sativa OSA-MIR159F
-UUGGACUGAAGGGUGCUCCC------ Oryza sativa OSA-MIR319A/-MIR319B
UUUGGAUUGAAGGGAGCUCUG------ Sorghum bicolor SBI-MIR159
-UUGGACUGAAGGGUGCUCCC------ Sorghum bicolor SBI-MIR319
-UUGGACUGAAGGGAGCUCCC------ Medicago truncatula MTR-MIR319
UUUGGAUUGAAGGGAGCUCUG------ Saccharum officinarum SOF-MIR159A/-MIR159B/-MIR159D
UUUGGAUUGAAAGGAGCUCUU------ Saccharum officinarum SOF-MIR159E
CUUGGAUUGAAGGGAGCUCCU------ Saccharum officinarum SOF-MIR159C
UUUGGAUUGAAGGGAGCUCUA------ Glycine max GMA-MIR159
-UUGGACUGAAGGGAGCUCCC------ Glycine max GMA-MIR319A/-MIR319B
-UUGGACUGAAAGGAGCUCCU------ Glycine max GMA-MIR319C
UUUGGAUUGAAGGGAGCUCUG------ Zea mays ZMA-MIR159A/-MIR159B
CUUGGAUUGAAGGGAGCUCCU------ Zea mays ZMA-MIR159C/-MIR159D
-UUGGACUGAAGGGUGCUCCC------ Zea mays ZMA-MIR319A/-MIR319C/-MIR319B/-MIR319D
CUUGGAUUGAAGGGAGCUCCU------ Sorghum bicolor SBI-MIR159B
UUUGGAUUGAAGGGAGCUCUA------ Populus trichocarpa PTC-MIR159A/-MIR159B/-MIR159C
CUUGGAUUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR159D
CUUGGGGUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR159E
AUUGGAGUGAAGGGAGCUCGA------ Populus trichocarpa PTC-MIR159F
-UUGGACUGAAGGGAGCUCCC------ Populus trichocarpa PTC-MIR319A/-MIR319B/-MIR319C/-MIR319D
-UUGGACUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR319E/-MIR319F/-MIR319G/-MIR319H
CUUGGACUGAAGGGAGCUCC------- Physcomitrella patens PPT-MIR319A/-MIR319B
CUUGGACUGAAGGGAGCUCCC------ Physcomitrella patens PPT-MIR319C/-MIR319D/-MIR319E
-UUGGAUUGAAGGGAGCUCCA------ Pinus taeda PTA-MIR159A
-UUGGAUUGAAGAGAGCUCCC------ Pinus taeda PTA-MIR159B
CUUGGAUUGAAGGGAGCUCCC------ Pinus taeda PTA-MIR159C
-UUGGACUGAAGGGAGCUCC------- Pinus taeda PTA-MIR319
CUUGGAUUGAAGGGAGCUCCC------ Selaginella moellendorffii SMO-MIR159
-------UGCUGCCGACUCAUGCAUCC Selaginella moellendorffii SMO-MIR319
UUUGGAUUGAAGGGAGCUCUG------ Triticum aestivum TAE-MIR159A/-MIR159B
UUUGGAUUGAAGGGAGCUCUA------ Brassica napus BNA-MIR159
CUUGGAGUGAAGGGAGCUCUC------ Vitis vinifera VVI-MIR159A/-MIR159B
UUUGGAUUGAAGGGAGCUCUA------ Vitis vinifera VVI-MIR159C
CUUGGACUGAAGGGAGCUCCC------ Vitis vinifera VVI-MIR319B/-MIR319C/-MIR319F
AUUGGACUGAAGGGAGCUCCC------ Vitis vinifera VVI-MIR319G

MIPF0000010

family_cluster

description
  • MIPF0000010
    UUUGGAUUGAAGGGAGCUCUA------ Arabidopsis thaliana ATH-MIR159A
    UUUGGAUUGAAGGGAGCUCUU------ Arabidopsis thaliana ATH-MIR159B
    -UUGGACUGAAGGGAGCUCCC---U-- Arabidopsis thaliana ATH-MIR319A/-MIR319B
    UUUGGAUUGAAGGGAGCUCCU------ Arabidopsis thaliana ATH-MIR159C
    -UUGGACUGAAGGGAGCUCCU---U-- Arabidopsis thaliana ATH-MIR319C
    UUUGGAUUGAAGGGAGCUCUG------ Oryza sativa OSA-MIR159A/-MIR159B
    AUUGGAUUGAAGGGAGCUCCA------ Oryza sativa OSA-MIR159C
    AUUGGAUUGAAGGGAGCUCCG------ Oryza sativa OSA-MIR159D
    AUUGGAUUGAAGGGAGCUCCU------ Oryza sativa OSA-MIR159E
    CUUGGAUUGAAGGGAGCUCUA------ Oryza sativa OSA-MIR159F
    -UUGGACUGAAGGGUGCUCCC------ Oryza sativa OSA-MIR319A/-MIR319B
    UUUGGAUUGAAGGGAGCUCUG------ Sorghum bicolor SBI-MIR159
    -UUGGACUGAAGGGUGCUCCC------ Sorghum bicolor SBI-MIR319
    -UUGGACUGAAGGGAGCUCCC------ Medicago truncatula MTR-MIR319
    UUUGGAUUGAAGGGAGCUCUG------ Saccharum officinarum SOF-MIR159A/-MIR159B/-MIR159D
    UUUGGAUUGAAAGGAGCUCUU------ Saccharum officinarum SOF-MIR159E
    CUUGGAUUGAAGGGAGCUCCU------ Saccharum officinarum SOF-MIR159C
    UUUGGAUUGAAGGGAGCUCUA------ Glycine max GMA-MIR159
    -UUGGACUGAAGGGAGCUCCC------ Glycine max GMA-MIR319A/-MIR319B
    -UUGGACUGAAAGGAGCUCCU------ Glycine max GMA-MIR319C
    UUUGGAUUGAAGGGAGCUCUG------ Zea mays ZMA-MIR159A/-MIR159B
    CUUGGAUUGAAGGGAGCUCCU------ Zea mays ZMA-MIR159C/-MIR159D
    -UUGGACUGAAGGGUGCUCCC------ Zea mays ZMA-MIR319A/-MIR319C/-MIR319B/-MIR319D
    CUUGGAUUGAAGGGAGCUCCU------ Sorghum bicolor SBI-MIR159B
    UUUGGAUUGAAGGGAGCUCUA------ Populus trichocarpa PTC-MIR159A/-MIR159B/-MIR159C
    CUUGGAUUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR159D
    CUUGGGGUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR159E
    AUUGGAGUGAAGGGAGCUCGA------ Populus trichocarpa PTC-MIR159F
    -UUGGACUGAAGGGAGCUCCC------ Populus trichocarpa PTC-MIR319A/-MIR319B/-MIR319C/-MIR319D
    -UUGGACUGAAGGGAGCUCCU------ Populus trichocarpa PTC-MIR319E/-MIR319F/-MIR319G/-MIR319H
    CUUGGACUGAAGGGAGCUCC------- Physcomitrella patens PPT-MIR319A/-MIR319B
    CUUGGACUGAAGGGAGCUCCC------ Physcomitrella patens PPT-MIR319C/-MIR319D/-MIR319E
    -UUGGAUUGAAGGGAGCUCCA------ Pinus taeda PTA-MIR159A
    -UUGGAUUGAAGAGAGCUCCC------ Pinus taeda PTA-MIR159B
    CUUGGAUUGAAGGGAGCUCCC------ Pinus taeda PTA-MIR159C
    -UUGGACUGAAGGGAGCUCC------- Pinus taeda PTA-MIR319
    CUUGGAUUGAAGGGAGCUCCC------ Selaginella moellendorffii SMO-MIR159
    -------UGCUGCCGACUCAUGCAUCC Selaginella moellendorffii SMO-MIR319
    UUUGGAUUGAAGGGAGCUCUG------ Triticum aestivum TAE-MIR159A/-MIR159B
    UUUGGAUUGAAGGGAGCUCUA------ Brassica napus BNA-MIR159
    CUUGGAGUGAAGGGAGCUCUC------ Vitis vinifera VVI-MIR159A/-MIR159B
    UUUGGAUUGAAGGGAGCUCUA------ Vitis vinifera VVI-MIR159C
    CUUGGACUGAAGGGAGCUCCC------ Vitis vinifera VVI-MIR319B/-MIR319C/-MIR319F
    AUUGGACUGAAGGGAGCUCCC------ Vitis vinifera VVI-MIR319G
label
  • MIPF0000010
hasFile
seeAlso
miRNA