OMAT3P004540http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300045400000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P018020 | 0.960529 | - | AT1G65080 | OXA1 family protein | - | - |
| OMAT3P018140 | 0.951794 | - | AT3G63400 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | - | - |
| OMAT1P003000 | 0.942778 | - | AT1G08910 | EMB3001 (embryo defective 3001) | - | - |
| OMAT4P005770 | 0.937631 | - | AT4G18905 | transducin family protein / WD-40 repeat family protein | - | - |
| OMAT4P004070 | 0.936604 | - | AT4G14850 | LOI1 (lovastatin insensitive 1) | - | - |
| OMAT4P002140 | 0.936132 | - | AT4G08900 | arginase | - | - |
| OMAT1P016195 | 0.935851 | - | AT1G59510 | CF9 | - | - |
| OMAT1P016310 | 0.93529 | - | AT1G59750 | ARF1 (AUXIN RESPONSE FACTOR 1) | - | - |
| OMAT3P000370 | 0.935064 | - | AT3G01740 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P106080 | 0.93457 | - | AT5G20510 | AL5 (ALFIN-LIKE 5) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P010480 | -0.883165 | - | AT1G29930 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | - | - |
| OMAT2P105960 | -0.854867 | - | AT2G29390 | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) | - | - |
| OMAT3P000660 | -0.849528 | - | AT3G02470,AT3G02468 | [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) | - | - |
| OMAT3P105310 | -0.84441 | - | AT3G15810 | unknown protein | - | - |
| OMAT1P007430 | -0.835713 | - | AT1G20260 | hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | - | - |
| OMAT4P101090 | -0.832911 | - | AT4G03110 | RNA-binding protein, putative | - | - |
| OMAT3P112715 | -0.826896 | - | AT3G53420 | PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) | - | - |
| OMAT2P002950 | -0.819713 | - | - | - | AT2G18540 | cupin family protein |
| OMAT4P013575 | -0.817646 | - | AT4G39080 | VHA-A3 (VACUOLAR PROTON ATPASE A3) | - | - |
| OMAT4P013570 | -0.816389 | - | AT4G39080 | VHA-A3 (VACUOLAR PROTON ATPASE A3) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.36e-18 | :20 terms with high significance | |
| 1.36e-18 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0007275 | multicellular organismal development | 27/200 | 2.54 | 2.78e-06 | - | no |
| B | 3 | GO:0009790 | embryonic development | 11/200 | 4.17 | 1.58e-05 | - | no |
| B | 3 | GO:0006996 | organelle organization | 11/200 | 3.30 | 1.49e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 28/200 | 1.86 | 4.99e-04 | - | yes |
| B | 3 | GO:0044237 | cellular metabolic process | 67/200 | 1.42 | 5.56e-04 | - | yes |
| B | 3 | GO:0048856 | anatomical structure development | 19/200 | 2.12 | 6.93e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 33/200 | 1.70 | 9.30e-04 | - | yes |
| B | 3 | GO:0009791 | post-embryonic development | 14/200 | 2.37 | 9.61e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 33/200 | 1.66 | 1.30e-03 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 51/200 | 1.45 | 1.90e-03 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 28/200 | 1.66 | 2.92e-03 | - | yes |
| B | 4 | GO:0048608 | reproductive structure development | 11/200 | 2.26 | 3.88e-03 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 10/200 | 2.23 | 5.75e-03 | - | yes |
| B | 3 | GO:0022414 | reproductive process | 12/200 | 1.99 | 7.92e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 11/200 | 2.00 | 9.82e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 85/200 | 1.84 | 3.31e-10 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 80/200 | 1.82 | 2.65e-09 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 80/200 | 1.82 | 2.67e-09 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 88/200 | 1.73 | 3.91e-09 | - | yes |
| C | 3 | GO:0005622 | intracellular | 90/200 | 1.69 | 6.81e-09 | - | yes |
| C | 5 | GO:0005634 | nucleus | 37/200 | 2.37 | 2.75e-07 | - | yes |
| C | 4 | GO:0044428 | nuclear part | 14/200 | 4.21 | 1.49e-06 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 20/200 | 3.13 | 2.04e-06 | - | no |
| C | 3 | GO:0043234 | protein complex | 20/200 | 3.06 | 2.89e-06 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 11/200 | 4.06 | 2.06e-05 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 11/200 | 4.05 | 2.11e-05 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 10/200 | 4.14 | 3.55e-05 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 30/200 | 2.09 | 4.02e-05 | - | no |
| C | 3 | GO:0044422 | organelle part | 30/200 | 2.09 | 4.09e-05 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 54/200 | 1.56 | 2.32e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 57/200 | 1.52 | 2.67e-04 | - | yes |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 15/200 | 2.52 | 3.52e-04 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 15/200 | 2.52 | 3.52e-04 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 35/200 | 1.48 | 7.01e-03 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 153/200 | 1.88 | 1.00e-25 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 157/200 | 1.82 | 2.02e-25 | - | no |
| PS | 4 | PO:0009047 | stem | 153/200 | 1.81 | 9.27e-24 | - | no |
| PS | 3 | PO:0009010 | seed | 162/200 | 1.66 | 1.10e-21 | - | no |
| PS | 4 | PO:0009001 | fruit | 162/200 | 1.65 | 2.14e-21 | - | no |
| PS | 3 | PO:0006342 | infructescence | 162/200 | 1.65 | 2.14e-21 | - | no |
| PS | 3 | PO:0009031 | sepal | 156/200 | 1.69 | 6.46e-21 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 157/200 | 1.66 | 1.87e-20 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 157/200 | 1.66 | 1.87e-20 | - | no |
| PS | 4 | PO:0009009 | embryo | 158/200 | 1.64 | 8.62e-20 | - | no |
| PS | 3 | PO:0009005 | root | 152/200 | 1.69 | 8.64e-20 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 163/200 | 1.56 | 1.35e-18 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 138/200 | 1.78 | 1.36e-18 | - | no |
| PS | 5 | PO:0009046 | flower | 162/200 | 1.56 | 2.65e-18 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 149/200 | 1.66 | 5.06e-18 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 143/200 | 1.71 | 5.88e-18 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 143/200 | 1.70 | 6.68e-18 | - | no |
| PS | 5 | PO:0008037 | seedling | 147/200 | 1.67 | 8.10e-18 | - | no |
| PS | 3 | PO:0009013 | meristem | 139/200 | 1.73 | 1.15e-17 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 141/200 | 1.71 | 1.25e-17 | - | no |
| PS | 3 | PO:0009006 | shoot | 164/200 | 1.51 | 3.29e-17 | - | no |
| PS | 3 | PO:0009032 | petal | 145/200 | 1.65 | 4.84e-17 | - | no |
| PS | 3 | PO:0006001 | phyllome | 158/200 | 1.54 | 1.08e-16 | - | no |
| PS | 4 | PO:0009025 | leaf | 148/200 | 1.61 | 1.86e-16 | - | no |
| PS | 5 | PO:0020038 | petiole | 131/200 | 1.72 | 1.01e-15 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 132/200 | 1.71 | 1.22e-15 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 125/200 | 1.70 | 3.66e-14 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 134/200 | 1.62 | 8.43e-14 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 71/200 | 2.19 | 8.32e-12 | - | no |
| PS | 3 | PO:0020097 | generative cell | 71/200 | 2.19 | 8.32e-12 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 47/200 | 1.61 | 2.69e-04 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 158/200 | 1.90 | 3.65e-28 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 153/200 | 1.92 | 6.58e-27 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 154/200 | 1.87 | 1.02e-25 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 159/200 | 1.77 | 2.80e-24 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 159/200 | 1.76 | 4.88e-24 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 147/200 | 1.79 | 2.48e-21 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 160/200 | 1.62 | 6.81e-20 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 156/200 | 1.61 | 2.17e-18 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 160/200 | 1.57 | 3.31e-18 | - | no |
| PG | 5 | PO:0007133 | leaf production | 142/200 | 1.69 | 2.89e-17 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 142/200 | 1.69 | 2.96e-17 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 142/200 | 1.68 | 5.97e-17 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 160/200 | 1.53 | 9.32e-17 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 133/200 | 1.73 | 2.50e-16 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 133/200 | 1.73 | 2.63e-16 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 51/200 | 1.74 | 1.84e-05 | - | no |
| KW | 0 | complex | - | 26/200 | 3.07 | 1.11e-07 | - | no |
| KW | 0 | polymerase | - | 10/200 | 6.79 | 3.17e-07 | - | no |
| KW | 0 | nuclear | - | 14/200 | 4.56 | 5.58e-07 | - | no |
| KW | 0 | mitochondrion | - | 17/200 | 3.10 | 1.14e-05 | - | no |
| KW | 0 | repeat | - | 29/200 | 2.23 | 1.59e-05 | - | no |
| KW | 0 | mitochondrial | - | 10/200 | 4.43 | 1.88e-05 | - | no |
| KW | 0 | biosynthesis | - | 10/200 | 4.12 | 3.71e-05 | 3.75E-16 | yes |
| KW | 0 | subunit | - | 19/200 | 2.59 | 5.12e-05 | 4.21E-16 | no |
| KW | 0 | ubiquitin | - | 13/200 | 2.89 | 1.88e-04 | - | no |
| KW | 0 | nucleus | - | 26/200 | 2.02 | 2.25e-04 | - | yes |
| KW | 0 | helical | - | 10/200 | 3.32 | 2.46e-04 | - | no |
| KW | 0 | ligase | - | 11/200 | 2.82 | 6.07e-04 | - | no |
| KW | 0 | development | - | 16/200 | 2.29 | 6.89e-04 | - | no |
| KW | 0 | nucleotide | - | 15/200 | 2.36 | 7.11e-04 | - | no |
| KW | 0 | biological_process | - | 80/200 | 1.34 | 8.64e-04 | - | no |
| KW | 0 | region | - | 26/200 | 1.80 | 1.27e-03 | - | no |
| KW | 0 | transcription | - | 26/200 | 1.79 | 1.37e-03 | 1.02E-15 | no |
| KW | 0 | nucleic | - | 14/200 | 2.14 | 2.52e-03 | - | no |
| KW | 0 | cellular_component | - | 65/200 | 1.33 | 3.56e-03 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | translation | - | 11/200 | 2.22 | 4.40e-03 | - | no |
| KW | 0 | embryo | - | 14/200 | 2.02 | 4.43e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
