ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G12990.2http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u321299002000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G63400.1 | 0.947781 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | OMAT3P018140 | - | - | - |
| AT1G08910.1 | 0.94219 | EMB3001 (embryo defective 3001) | OMAT1P003000 | - | - | - |
| AT1G59750.1 | 0.941494 | ARF1 (AUXIN RESPONSE FACTOR 1) | OMAT1P016310 | - | - | - |
| AT4G18905.1 | 0.938236 | transducin family protein / WD-40 repeat family protein | OMAT4P005770 | - | - | - |
| AT4G19950.1 | 0.933927 | unknown protein | OMAT4P006060 | - | - | - |
| AT3G04020.1 | 0.932888 | unknown protein | - | - | - | - |
| AT4G08900.1 | 0.932409 | arginase | OMAT4P002140 | - | - | - |
| AT5G17270.1 | 0.931836 | tetratricopeptide repeat (TPR)-containing protein | - | - | - | - |
| AT3G11540.1 | 0.929564 | SPY (SPINDLY) | OMAT3P004030 | - | - | - |
| AT1G59510.1 | 0.928272 | CF9 | OMAT1P016195 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G03110.1 | -0.870315 | RNA-binding protein, putative | OMAT4P101090 | - | - | - |
| AT5G34850.1 | -0.859436 | PAP26 (PURPLE ACID PHOSPHATASE 26) | OMAT5P108500,OMAT5P108510 | [OMAT5P108500]-, [OMAT5P108510]- | OMAT5P009655,OMAT5P009660 | [OMAT5P009655]-, [OMAT5P009660]- |
| AT3G02470.1 | -0.858182 | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT1G29930.1 | -0.857112 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | OMAT1P010480 | - | - | - |
| AT3G02468.1 | -0.846882 | CPuORF9 (Conserved peptide upstream open reading frame 9) | OMAT3P000660 | - | OMAT3P100630 | - |
| AT4G39080.1 | -0.846255 | VHA-A3 (VACUOLAR PROTON ATPASE A3) | OMAT4P013570,OMAT4P013575 | [OMAT4P013570]-, [OMAT4P013575]- | - | - |
| AT3G56240.1 | -0.832519 | CCH (COPPER CHAPERONE) | OMAT3P113750 | - | OMAT3P015670 | - |
| AT3G53420.1 | -0.828484 | PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) | OMAT3P112710,OMAT3P112715 | [OMAT3P112710]-, [OMAT3P112715]- | OMAT3P014560 | - |
| AT5G24400.1 | -0.828159 | emb2024 (embryo defective 2024) | OMAT5P107240 | - | - | - |
| AT2G34420.1 | -0.820046 | LHB1B2 | OMAT2P107590 | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.41e-12 | :20 terms with high significance | |
| 1.41e-12 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0090304 | nucleic acid metabolic process | 31/200 | 2.06 | 4.00e-05 | - | yes |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 37/200 | 1.90 | 4.54e-05 | - | yes |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/200 | 1.86 | 6.90e-05 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 32/200 | 1.90 | 1.53e-04 | - | yes |
| B | 3 | GO:0007275 | multicellular organismal development | 23/200 | 2.17 | 1.69e-04 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 19/200 | 2.23 | 3.66e-04 | - | yes |
| B | 3 | GO:0048856 | anatomical structure development | 17/200 | 1.90 | 3.97e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 18/200 | 1.76 | 7.01e-03 | 1.02E-15 | no |
| C | 3 | GO:0043229 | intracellular organelle | 72/200 | 1.56 | 1.25e-05 | - | yes |
| C | 5 | GO:0005634 | nucleus | 33/200 | 2.11 | 1.43e-05 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 69/200 | 1.57 | 1.61e-05 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 69/200 | 1.57 | 1.62e-05 | - | yes |
| C | 3 | GO:0005622 | intracellular | 75/200 | 1.41 | 2.72e-04 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 72/200 | 1.41 | 3.55e-04 | - | yes |
| C | 4 | GO:0044428 | nuclear part | 10/200 | 3.01 | 5.63e-04 | - | no |
| C | 3 | GO:0043234 | protein complex | 15/200 | 2.29 | 9.53e-04 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 14/200 | 2.19 | 2.06e-03 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 23/200 | 1.60 | 9.19e-03 | - | no |
| C | 3 | GO:0044422 | organelle part | 23/200 | 1.60 | 9.27e-03 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 36/200 | 1.52 | 4.00e-03 | - | yes |
| M | 3 | GO:0000166 | nucleotide binding | 22/200 | 1.67 | 6.83e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 146/200 | 1.70 | 1.88e-18 | - | no |
| PS | 5 | PO:0009052 | pedicel | 139/200 | 1.71 | 3.82e-17 | - | no |
| PS | 4 | PO:0009047 | stem | 142/200 | 1.68 | 3.88e-17 | - | no |
| PS | 3 | PO:0009010 | seed | 151/200 | 1.54 | 3.62e-15 | - | no |
| PS | 4 | PO:0009001 | fruit | 151/200 | 1.54 | 6.33e-15 | - | no |
| PS | 3 | PO:0006342 | infructescence | 151/200 | 1.54 | 6.33e-15 | - | no |
| PS | 3 | PO:0009031 | sepal | 144/200 | 1.56 | 3.45e-14 | - | no |
| PS | 4 | PO:0009009 | embryo | 147/200 | 1.52 | 1.05e-13 | - | no |
| PS | 3 | PO:0009005 | root | 140/200 | 1.56 | 2.33e-13 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 143/200 | 1.52 | 7.79e-13 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 143/200 | 1.52 | 7.79e-13 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 152/200 | 1.45 | 1.40e-12 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 126/200 | 1.62 | 1.41e-12 | - | no |
| PS | 5 | PO:0009046 | flower | 151/200 | 1.45 | 2.25e-12 | - | no |
| PS | 4 | PO:0009025 | leaf | 139/200 | 1.51 | 4.93e-12 | - | no |
| PS | 3 | PO:0009013 | meristem | 127/200 | 1.58 | 8.01e-12 | - | no |
| PS | 3 | PO:0006001 | phyllome | 148/200 | 1.44 | 1.30e-11 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 129/200 | 1.54 | 3.66e-11 | - | no |
| PS | 3 | PO:0009006 | shoot | 152/200 | 1.40 | 5.67e-11 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 134/200 | 1.49 | 1.05e-10 | - | no |
| PS | 5 | PO:0008037 | seedling | 132/200 | 1.50 | 1.38e-10 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 126/200 | 1.53 | 1.58e-10 | - | no |
| PS | 3 | PO:0009032 | petal | 130/200 | 1.48 | 4.93e-10 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 125/200 | 1.49 | 1.57e-09 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 118/200 | 1.53 | 1.73e-09 | - | no |
| PS | 5 | PO:0020038 | petiole | 116/200 | 1.52 | 3.51e-09 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 110/200 | 1.50 | 4.63e-08 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 116/200 | 1.40 | 8.47e-07 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 56/200 | 1.73 | 8.61e-06 | - | no |
| PS | 3 | PO:0020097 | generative cell | 56/200 | 1.73 | 8.61e-06 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 144/200 | 1.81 | 5.30e-21 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 146/200 | 1.76 | 3.64e-20 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 143/200 | 1.74 | 8.92e-19 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 148/200 | 1.64 | 1.96e-17 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 148/200 | 1.64 | 3.14e-17 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 134/200 | 1.63 | 3.21e-14 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 149/200 | 1.51 | 9.75e-14 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 149/200 | 1.46 | 2.38e-12 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 144/200 | 1.48 | 3.86e-12 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 150/200 | 1.43 | 1.28e-11 | - | no |
| PG | 5 | PO:0007133 | leaf production | 129/200 | 1.53 | 4.73e-11 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 129/200 | 1.53 | 4.81e-11 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 129/200 | 1.52 | 8.33e-11 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 120/200 | 1.56 | 2.13e-10 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 120/200 | 1.56 | 2.22e-10 | - | no |
| KW | 0 | biological_process | - | 95/200 | 1.59 | 5.20e-08 | - | no |
| KW | 0 | cellular_component | - | 80/200 | 1.64 | 3.29e-07 | - | no |
| KW | 0 | biosynthesis | - | 12/200 | 4.94 | 1.18e-06 | 3.75E-16 | yes |
| KW | 0 | nucleotide | - | 20/200 | 3.14 | 1.87e-06 | - | no |
| KW | 0 | repeat | - | 30/200 | 2.31 | 5.86e-06 | - | no |
| KW | 0 | molecular_function | - | 77/200 | 1.52 | 1.22e-05 | - | no |
| KW | 0 | complex | - | 22/200 | 2.60 | 1.46e-05 | - | no |
| KW | 0 | nuclear | - | 12/200 | 3.90 | 1.49e-05 | - | no |
| KW | 0 | transcription | - | 30/200 | 2.07 | 5.13e-05 | 1.02E-15 | no |
| KW | 0 | nucleus | - | 26/200 | 2.02 | 2.25e-04 | - | yes |
| KW | 0 | nucleic | - | 16/200 | 2.45 | 3.32e-04 | - | no |
| KW | 0 | motif | - | 13/200 | 2.68 | 4.13e-04 | - | no |
| KW | 0 | containing | - | 28/200 | 1.68 | 2.45e-03 | 5.00E-20 | no |
| KW | 0 | embryo | - | 14/200 | 2.02 | 4.43e-03 | - | no |
| KW | 0 | development | - | 14/200 | 2.01 | 4.60e-03 | - | no |
| KW | 0 | region | - | 24/200 | 1.66 | 5.24e-03 | - | no |
| KW | 0 | ubiquitin | - | 10/200 | 2.23 | 5.81e-03 | - | no |
| KW | 0 | subunit | - | 14/200 | 1.91 | 7.15e-03 | 4.21E-16 | no |
| KW | 0 | mitochondrion | - | 11/200 | 2.01 | 9.51e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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