ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G60500.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u326050001000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G34260.1 | 0.980178 | transducin family protein / WD-40 repeat family protein | OMAT2P008440 | - | - | - |
| AT3G57000.1 | 0.97959 | nucleolar essential protein-related | - | - | - | - |
| AT2G39795.1 | 0.979588 | mitochondrial glycoprotein family protein / MAM33 family protein | OMAT2P010530 | - | OMAT2P109800 | - |
| AT2G18410.1 | 0.978229 | unknown protein | OMAT2P002940 | - | - | - |
| AT5G13850.1 | 0.975417 | NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) | OMAT5P004730 | - | - | - |
| AT1G02370.1 | 0.9732 | pentatricopeptide (PPR) repeat-containing protein | OMAT1P000570 | - | - | - |
| AtsnoR14-2 | 0.971531 | AtsnoR14-2 | OMAT1P011355 | - | - | - |
| AT1G01940.1 | 0.970601 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | - | - | - | - |
| AT1G61990.1 | 0.970374 | mitochondrial transcription termination factor-related / mTERF-related | OMAT1P016890 | - | - | - |
| AT4G20020.1 | 0.969829 | unknown protein | OMAT4P105110 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G34420.1 | -0.844439 | LHB1B2 | OMAT2P107590 | - | - | - |
| AT1G29930.1 | -0.834899 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | OMAT1P010480 | - | - | - |
| AT3G56240.1 | -0.830116 | CCH (COPPER CHAPERONE) | OMAT3P113750 | - | OMAT3P015670 | - |
| AT1G79040.1 | -0.81725 | PSBR (photosystem II subunit R) | OMAT1P023540 | - | OMAT1P120810 | - |
| AT5G02380.1 | -0.809766 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT3G47470.1 | -0.790557 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) | OMAT3P110830 | - | OMAT3P012260 | - |
| AT1G61520.1 | -0.788129 | LHCA3 | OMAT1P016710 | - | OMAT1P114900 | - |
| AT1G76180.1 | -0.787477 | ERD14 (EARLY RESPONSE TO DEHYDRATION 14) | OMAT1P119740 | - | OMAT1P022380 | - |
| AT4G20510.1 | -0.784929 | transposable element gene | - | - | - | - |
| AT5G01530.1 | -0.784466 | chlorophyll A-B binding protein CP29 (LHCB4) | OMAT5P000165 | - | OMAT5P100180,OMAT5P100190 | [OMAT5P100180]-, [OMAT5P100190]- |
Get whole results
Over-Representation Analysis Result
| p-value | <= 7.16e-23 | :20 terms with high significance | |
| 7.16e-23 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 12/200 | 9.37 | 6.53e-10 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 12/200 | 9.07 | 9.70e-10 | - | no |
| B | 5 | GO:0006396 | RNA processing | 12/200 | 5.42 | 4.16e-07 | 3.82E-16 | yes |
| B | 4 | GO:0010467 | gene expression | 35/200 | 1.72 | 5.18e-04 | 1.77E-15 | yes |
| B | 5 | GO:0006412 | translation | 15/200 | 2.07 | 2.70e-03 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 22/200 | 8.11 | 6.08e-15 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 22/200 | 8.09 | 6.37e-15 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 19/200 | 7.86 | 6.14e-13 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 27/200 | 4.53 | 1.20e-11 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 27/200 | 4.53 | 1.20e-11 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 20/200 | 5.73 | 6.31e-11 | - | no |
| C | 4 | GO:0044428 | nuclear part | 19/200 | 5.71 | 1.88e-10 | - | no |
| C | 5 | GO:0005730 | nucleolus | 14/200 | 8.17 | 2.42e-10 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 36/200 | 2.51 | 9.20e-08 | - | no |
| C | 3 | GO:0044422 | organelle part | 36/200 | 2.51 | 9.39e-08 | - | no |
| C | 3 | GO:0044424 | intracellular part | 84/200 | 1.65 | 1.10e-07 | - | yes |
| C | 5 | GO:0005739 | mitochondrion | 22/200 | 3.44 | 1.32e-07 | - | no |
| C | 3 | GO:0005622 | intracellular | 86/200 | 1.62 | 1.78e-07 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 75/200 | 1.62 | 1.49e-06 | - | yes |
| C | 4 | GO:0005840 | ribosome | 12/200 | 4.68 | 2.12e-06 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 67/200 | 1.53 | 5.98e-05 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 67/200 | 1.52 | 6.01e-05 | - | yes |
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | 3.64E-21 | yes |
| C | 4 | GO:0005737 | cytoplasm | 56/200 | 1.50 | 4.85e-04 | - | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 52/200 | 1.50 | 7.76e-04 | - | no |
| C | 3 | GO:0043234 | protein complex | 14/200 | 2.14 | 2.55e-03 | - | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 10/200 | 4.62 | 1.29e-05 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 42/200 | 1.77 | 7.51e-05 | - | yes |
| M | 4 | GO:0003723 | RNA binding | 18/200 | 2.59 | 7.59e-05 | 0 | yes |
| M | 3 | GO:0000166 | nucleotide binding | 25/200 | 1.89 | 7.44e-04 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 167/200 | 1.94 | 4.06e-33 | - | no |
| PS | 5 | PO:0009052 | pedicel | 159/200 | 1.96 | 4.16e-30 | - | no |
| PS | 3 | PO:0009005 | root | 162/200 | 1.80 | 1.85e-26 | - | no |
| PS | 5 | PO:0020038 | petiole | 149/200 | 1.96 | 1.88e-26 | - | no |
| PS | 4 | PO:0009025 | leaf | 162/200 | 1.76 | 3.31e-25 | - | no |
| PS | 4 | PO:0009009 | embryo | 164/200 | 1.70 | 9.14e-24 | - | no |
| PS | 4 | PO:0009047 | stem | 153/200 | 1.81 | 9.27e-24 | - | no |
| PS | 3 | PO:0009010 | seed | 165/200 | 1.69 | 9.51e-24 | - | no |
| PS | 4 | PO:0009001 | fruit | 165/200 | 1.68 | 1.92e-23 | - | no |
| PS | 3 | PO:0006342 | infructescence | 165/200 | 1.68 | 1.92e-23 | - | no |
| PS | 5 | PO:0008037 | seedling | 156/200 | 1.77 | 2.44e-23 | - | no |
| PS | 3 | PO:0009031 | sepal | 159/200 | 1.72 | 7.16e-23 | - | no |
| PS | 3 | PO:0009032 | petal | 154/200 | 1.76 | 2.11e-22 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 160/200 | 1.70 | 2.13e-22 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 160/200 | 1.70 | 2.13e-22 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 149/200 | 1.81 | 2.34e-22 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 142/200 | 1.84 | 3.48e-21 | - | no |
| PS | 3 | PO:0009006 | shoot | 170/200 | 1.57 | 4.23e-21 | - | no |
| PS | 3 | PO:0006001 | phyllome | 165/200 | 1.61 | 5.05e-21 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 148/200 | 1.76 | 7.09e-21 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 153/200 | 1.70 | 2.17e-20 | - | no |
| PS | 5 | PO:0009046 | flower | 165/200 | 1.59 | 3.32e-20 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 165/200 | 1.58 | 7.25e-20 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 143/200 | 1.70 | 6.68e-18 | - | no |
| PS | 3 | PO:0009013 | meristem | 136/200 | 1.69 | 4.51e-16 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 133/200 | 1.71 | 6.45e-16 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 128/200 | 1.74 | 1.26e-15 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 122/200 | 1.47 | 8.34e-09 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 59/200 | 1.82 | 8.10e-07 | - | no |
| PS | 3 | PO:0020097 | generative cell | 59/200 | 1.82 | 8.10e-07 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 164/200 | 1.98 | 7.43e-33 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 163/200 | 1.98 | 1.68e-32 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 160/200 | 2.01 | 3.53e-32 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 164/200 | 1.82 | 6.53e-28 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 164/200 | 1.81 | 1.18e-27 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 156/200 | 1.90 | 2.38e-27 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 168/200 | 1.65 | 1.72e-23 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 165/200 | 1.67 | 3.21e-23 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 168/200 | 1.60 | 7.64e-22 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 142/200 | 1.85 | 2.17e-21 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 142/200 | 1.85 | 2.30e-21 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 160/200 | 1.65 | 7.29e-21 | - | no |
| PG | 5 | PO:0007133 | leaf production | 147/200 | 1.75 | 4.07e-20 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 147/200 | 1.75 | 4.17e-20 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 147/200 | 1.74 | 8.92e-20 | - | no |
| KW | 0 | nucleolus | - | 14/200 | 10.30 | 9.21e-12 | - | no |
| KW | 0 | complex | - | 31/200 | 3.66 | 9.90e-11 | - | no |
| KW | 0 | ipr017986 | - | 11/200 | 8.20 | 1.24e-08 | - | no |
| KW | 0 | eukaryotic | - | 13/200 | 6.61 | 1.37e-08 | - | no |
| KW | 0 | ipr001680 | - | 11/200 | 7.40 | 3.85e-08 | - | no |
| KW | 0 | ipr015943 | - | 11/200 | 7.32 | 4.39e-08 | - | no |
| KW | 0 | ipr011046 | - | 11/200 | 7.09 | 6.20e-08 | - | no |
| KW | 0 | ribosome | - | 14/200 | 5.30 | 8.06e-08 | - | no |
| KW | 0 | nucleotide | - | 22/200 | 3.46 | 1.19e-07 | - | no |
| KW | 0 | processing | - | 10/200 | 7.05 | 2.18e-07 | 3.82E-16 | yes |
| KW | 0 | ribosomal | - | 14/200 | 4.64 | 4.46e-07 | - | no |
| KW | 0 | mitochondrion | - | 18/200 | 3.28 | 2.97e-06 | - | no |
| KW | 0 | translation | - | 16/200 | 3.23 | 1.14e-05 | - | no |
| KW | 0 | ubiquitin | - | 15/200 | 3.34 | 1.32e-05 | - | no |
| KW | 0 | subunit | - | 20/200 | 2.73 | 1.62e-05 | 4.21E-16 | no |
| KW | 0 | mitochondrial | - | 10/200 | 4.43 | 1.88e-05 | - | no |
| KW | 0 | cellular_component | - | 73/200 | 1.50 | 4.45e-05 | - | no |
| KW | 0 | repeat | - | 27/200 | 2.08 | 1.04e-04 | - | no |
| KW | 0 | constituent | - | 10/200 | 3.57 | 1.32e-04 | - | no |
| KW | 0 | ipr002885 | - | 10/200 | 3.57 | 1.32e-04 | - | no |
| KW | 0 | pentatricopeptide | - | 10/200 | 3.44 | 1.80e-04 | - | no |
| KW | 0 | biological_process | - | 82/200 | 1.37 | 3.04e-04 | - | no |
| KW | 0 | motif | - | 13/200 | 2.68 | 4.13e-04 | - | no |
| KW | 0 | ligase | - | 11/200 | 2.82 | 6.07e-04 | - | no |
| KW | 0 | molecular_function | - | 70/200 | 1.39 | 7.87e-04 | - | no |
| KW | 0 | small | - | 11/200 | 2.73 | 8.00e-04 | - | no |
| KW | 0 | structural | - | 10/200 | 2.85 | 8.66e-04 | - | no |
| KW | 0 | nucleic | - | 15/200 | 2.29 | 9.44e-04 | - | no |
| KW | 0 | intracellular | - | 11/200 | 2.13 | 6.01e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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