OMAT3P017050http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300170500000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P010970 | 0.989772 | - | AT4G32720 | AtLa1 (Arabidopsis thaliana La protein 1) | - | - |
| OMAT4P011990 | 0.987699 | - | AT4G34910 | DEAD/DEAH box helicase, putative (RH16) | - | - |
| OMAT1P014030 | 0.985961 | - | AT1G50920 | GTP-binding protein-related | - | - |
| OMAT3P007560 | 0.985849 | - | AT3G20000 | TOM40 | - | - |
| OMAT1P022400 | 0.984038 | - | AT1G76300 | SmD3 (snRNP core protein SmD3) | - | - |
| OMAT5P004780 | 0.983751 | - | AT5G14050 | transducin family protein / WD-40 repeat family protein | - | - |
| OMAT3P016330 | 0.983066 | - | AT3G57940 | unknown protein | - | - |
| OMAT2P010880 | 0.982942 | - | AT2G40700 | DEAD/DEAH box helicase, putative (RH17) | - | - |
| OMAT1P008130 | 0.981774 | - | AT1G22270 | unknown protein | - | - |
| OMAT3P004640 | 0.98074 | - | AT3G13230 | RNA binding | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P023540 | -0.780396 | - | AT1G79040 | PSBR (photosystem II subunit R) | - | - |
| OMAT1P010480 | -0.761262 | - | AT1G29930 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | - | - |
| OMAT2P107590 | -0.755978 | - | AT2G34420 | LHB1B2 | - | - |
| OMAT5P100430 | -0.749726 | - | AT5G02380 | MT2B (METALLOTHIONEIN 2B) | AT5G02370 | kinesin motor protein-related |
| OMAT4P107010 | -0.744649 | - | AT4G25650 | ACD1-LIKE (ACD1-LIKE) | - | - |
| OMAT3P110830 | -0.740895 | - | AT3G47470 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) | - | - |
| OMAT3P000660 | -0.735466 | - | AT3G02470,AT3G02468 | [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) | - | - |
| OMAT5P108800 | -0.733559 | - | AT5G36160 | aminotransferase-related | - | - |
| OMAT1P108460 | -0.731366 | - | AT1G27100 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P016710 | -0.728369 | - | AT1G61520 | LHCA3 | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.14e-16 | :20 terms with high significance | |
| 1.14e-16 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 13/200 | 10.15 | 5.27e-11 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 13/200 | 9.83 | 8.11e-11 | - | no |
| B | 5 | GO:0006396 | RNA processing | 15/200 | 6.78 | 9.78e-10 | 3.82E-16 | yes |
| B | 5 | GO:0016070 | RNA metabolic process | 21/200 | 2.47 | 4.69e-05 | - | yes |
| B | 4 | GO:0010467 | gene expression | 38/200 | 1.87 | 5.40e-05 | 1.77E-15 | yes |
| B | 5 | GO:0006412 | translation | 17/200 | 2.34 | 3.87e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 27/200 | 1.80 | 1.07e-03 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 51/200 | 1.45 | 1.90e-03 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 27/200 | 1.60 | 5.58e-03 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 52/200 | 1.34 | 8.23e-03 | - | yes |
| C | 5 | GO:0005730 | nucleolus | 16/200 | 9.33 | 2.02e-12 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 28/200 | 4.70 | 2.13e-12 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 28/200 | 4.70 | 2.13e-12 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 19/200 | 7.00 | 5.01e-12 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 19/200 | 6.99 | 5.21e-12 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 17/200 | 7.03 | 5.21e-11 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 25/200 | 3.91 | 1.52e-09 | - | no |
| C | 3 | GO:0005622 | intracellular | 90/200 | 1.69 | 6.81e-09 | - | yes |
| C | 4 | GO:0044428 | nuclear part | 17/200 | 5.11 | 8.19e-09 | - | no |
| C | 3 | GO:0044424 | intracellular part | 87/200 | 1.71 | 9.27e-09 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 80/200 | 1.73 | 2.86e-08 | - | yes |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 16/200 | 4.59 | 9.77e-08 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 35/200 | 2.44 | 2.76e-07 | - | no |
| C | 3 | GO:0044422 | organelle part | 35/200 | 2.44 | 2.81e-07 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 72/200 | 1.64 | 1.92e-06 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 72/200 | 1.64 | 1.93e-06 | - | yes |
| C | 4 | GO:0005840 | ribosome | 11/200 | 4.29 | 1.17e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 61/200 | 1.63 | 1.95e-05 | - | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 57/200 | 1.64 | 3.19e-05 | - | no |
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | 3.64E-21 | yes |
| C | 3 | GO:0043234 | protein complex | 16/200 | 2.45 | 3.35e-04 | - | no |
| M | 4 | GO:0003723 | RNA binding | 22/200 | 3.17 | 5.44e-07 | 0 | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 46/200 | 1.94 | 3.01e-06 | - | yes |
| M | 3 | GO:0003735 | structural constituent of ribosome | 10/200 | 4.62 | 1.29e-05 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 24/200 | 1.82 | 1.62e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 155/200 | 1.80 | 4.80e-24 | - | no |
| PS | 5 | PO:0020038 | petiole | 142/200 | 1.87 | 7.06e-22 | - | no |
| PS | 5 | PO:0009052 | pedicel | 145/200 | 1.78 | 1.47e-20 | - | no |
| PS | 3 | PO:0009005 | root | 153/200 | 1.70 | 2.12e-20 | - | no |
| PS | 4 | PO:0009025 | leaf | 153/200 | 1.66 | 2.66e-19 | - | no |
| PS | 4 | PO:0009047 | stem | 145/200 | 1.72 | 8.26e-19 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 141/200 | 1.71 | 1.25e-17 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 142/200 | 1.69 | 2.09e-17 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 134/200 | 1.73 | 1.14e-16 | - | no |
| PS | 4 | PO:0009009 | embryo | 152/200 | 1.57 | 2.72e-16 | - | no |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | no |
| PS | 3 | PO:0009010 | seed | 153/200 | 1.56 | 3.07e-16 | - | no |
| PS | 5 | PO:0008037 | seedling | 144/200 | 1.63 | 3.49e-16 | - | no |
| PS | 4 | PO:0009001 | fruit | 153/200 | 1.56 | 5.47e-16 | - | no |
| PS | 3 | PO:0006342 | infructescence | 153/200 | 1.56 | 5.47e-16 | - | no |
| PS | 3 | PO:0009032 | petal | 143/200 | 1.63 | 5.65e-16 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 149/200 | 1.58 | 8.01e-16 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 149/200 | 1.58 | 8.01e-16 | - | no |
| PS | 3 | PO:0006001 | phyllome | 156/200 | 1.52 | 1.40e-15 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 144/200 | 1.60 | 2.56e-15 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 137/200 | 1.63 | 9.35e-15 | - | no |
| PS | 3 | PO:0009006 | shoot | 159/200 | 1.46 | 2.22e-14 | - | no |
| PS | 5 | PO:0009046 | flower | 153/200 | 1.47 | 2.44e-13 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 153/200 | 1.46 | 4.59e-13 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 120/200 | 1.63 | 6.59e-12 | - | no |
| PS | 3 | PO:0009013 | meristem | 127/200 | 1.58 | 8.01e-12 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 123/200 | 1.58 | 2.75e-11 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 113/200 | 1.36 | 6.51e-06 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 149/200 | 1.87 | 3.61e-24 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 151/200 | 1.82 | 2.73e-23 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 150/200 | 1.82 | 4.94e-23 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 146/200 | 1.78 | 1.01e-20 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 142/200 | 1.68 | 5.97e-17 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 134/200 | 1.74 | 7.50e-17 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 134/200 | 1.74 | 7.91e-17 | - | no |
| PG | 5 | PO:0007133 | leaf production | 141/200 | 1.68 | 1.00e-16 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 141/200 | 1.68 | 1.02e-16 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 155/200 | 1.52 | 2.33e-15 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 155/200 | 1.48 | 4.95e-14 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 147/200 | 1.52 | 1.51e-13 | - | no |
| KW | 0 | nucleolus | - | 15/200 | 11.04 | 6.81e-13 | - | no |
| KW | 0 | ribosomal | - | 19/200 | 6.29 | 3.42e-11 | - | no |
| KW | 0 | processing | - | 13/200 | 9.16 | 2.05e-10 | 3.82E-16 | yes |
| KW | 0 | mitochondrion | - | 23/200 | 4.19 | 1.63e-09 | - | no |
| KW | 0 | ribosome | - | 16/200 | 6.06 | 1.66e-09 | - | no |
| KW | 0 | complex | - | 29/200 | 3.42 | 1.85e-09 | - | no |
| KW | 0 | nucleotide | - | 22/200 | 3.46 | 1.19e-07 | - | no |
| KW | 0 | ipr017986 | - | 10/200 | 7.46 | 1.23e-07 | - | no |
| KW | 0 | ipr001680 | - | 10/200 | 6.73 | 3.43e-07 | - | no |
| KW | 0 | ipr015943 | - | 10/200 | 6.65 | 3.87e-07 | - | no |
| KW | 0 | mitochondrial | - | 12/200 | 5.32 | 5.14e-07 | - | no |
| KW | 0 | ipr011046 | - | 10/200 | 6.44 | 5.29e-07 | - | no |
| KW | 0 | translation | - | 18/200 | 3.63 | 6.71e-07 | - | no |
| KW | 0 | eukaryotic | - | 10/200 | 5.08 | 5.24e-06 | - | no |
| KW | 0 | motif | - | 14/200 | 2.88 | 1.23e-04 | - | no |
| KW | 0 | constituent | - | 10/200 | 3.57 | 1.32e-04 | - | no |
| KW | 0 | subunit | - | 18/200 | 2.46 | 1.54e-04 | 4.21E-16 | no |
| KW | 0 | ubiquitin | - | 13/200 | 2.89 | 1.88e-04 | - | no |
| KW | 0 | structural | - | 10/200 | 2.85 | 8.66e-04 | - | no |
| KW | 0 | region | - | 25/200 | 1.73 | 2.63e-03 | - | no |
| KW | 0 | nucleic | - | 13/200 | 1.99 | 6.32e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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