ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)
AT3G60500.2http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u326050002000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G18410.1 | 0.971407 | unknown protein | OMAT2P002940 | - | - | - |
| AT5G13850.1 | 0.966794 | NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) | OMAT5P004730 | - | - | - |
| AT5G64680.3 | 0.961975 | unknown protein | OMAT5P019900 | - | - | - |
| AT5G52380.1 | 0.961908 | zinc knuckle (CCHC-type) family protein | - | - | - | - |
| AtsnoR14-2 | 0.961344 | AtsnoR14-2 | OMAT1P011355 | - | - | - |
| AT3G25430.1 | 0.960739 | CAF1 family ribonuclease | - | - | - | - |
| AT3G07630.1 | 0.959498 | ADT2 (arogenate dehydratase 2) | OMAT3P002710 | - | - | - |
| AT1G11475.1 | 0.959398 | NRPB10 | OMAT1P003940 | - | - | - |
| AT2G39795.1 | 0.959039 | mitochondrial glycoprotein family protein / MAM33 family protein | OMAT2P010530 | - | OMAT2P109800 | - |
| AT3G57000.1 | 0.958545 | nucleolar essential protein-related | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G34420.1 | -0.877147 | LHB1B2 | OMAT2P107590 | - | - | - |
| AT1G29930.1 | -0.864832 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | OMAT1P010480 | - | - | - |
| AT1G79040.1 | -0.836932 | PSBR (photosystem II subunit R) | OMAT1P023540 | - | OMAT1P120810 | - |
| AT3G56240.1 | -0.826128 | CCH (COPPER CHAPERONE) | OMAT3P113750 | - | OMAT3P015670 | - |
| AT5G01530.1 | -0.819374 | chlorophyll A-B binding protein CP29 (LHCB4) | OMAT5P000165 | - | OMAT5P100180,OMAT5P100190 | [OMAT5P100180]-, [OMAT5P100190]- |
| AT3G47470.1 | -0.813874 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) | OMAT3P110830 | - | OMAT3P012260 | - |
| AT1G61520.1 | -0.811941 | LHCA3 | OMAT1P016710 | - | OMAT1P114900 | - |
| AT5G02380.1 | -0.811825 | MT2B (METALLOTHIONEIN 2B) | OMAT5P100430 | - | - | - |
| AT2G35450.1 | -0.794601 | catalytic/ hydrolase | OMAT2P107950 | - | - | - |
| AT3G02468.1 | -0.791879 | CPuORF9 (Conserved peptide upstream open reading frame 9) | OMAT3P000660 | - | OMAT3P100630 | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.21e-23 | :20 terms with high significance | |
| 3.21e-23 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006396 | RNA processing | 12/200 | 5.42 | 4.16e-07 | 3.82E-16 | yes |
| B | 4 | GO:0010467 | gene expression | 31/200 | 1.52 | 6.76e-03 | 1.77E-15 | yes |
| C | 4 | GO:0070013 | intracellular organelle lumen | 16/200 | 5.90 | 2.49e-09 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 16/200 | 5.89 | 2.57e-09 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 14/200 | 5.79 | 2.55e-08 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 23/200 | 3.59 | 3.12e-08 | - | no |
| C | 4 | GO:0044428 | nuclear part | 14/200 | 4.21 | 1.49e-06 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 13/200 | 3.73 | 1.26e-05 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 30/200 | 2.09 | 4.02e-05 | - | no |
| C | 3 | GO:0044422 | organelle part | 30/200 | 2.09 | 4.09e-05 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 16/200 | 2.68 | 1.13e-04 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 16/200 | 2.68 | 1.13e-04 | - | no |
| C | 3 | GO:0005622 | intracellular | 76/200 | 1.43 | 1.54e-04 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 72/200 | 1.41 | 3.55e-04 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 65/200 | 1.41 | 8.62e-04 | - | yes |
| C | 3 | GO:0043234 | protein complex | 14/200 | 2.14 | 2.55e-03 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 59/200 | 1.34 | 4.87e-03 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 59/200 | 1.34 | 4.88e-03 | - | yes |
| C | 4 | GO:0005737 | cytoplasm | 51/200 | 1.36 | 6.79e-03 | - | yes |
| M | 4 | GO:0003723 | RNA binding | 20/200 | 2.88 | 7.12e-06 | 0 | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 44/200 | 1.85 | 1.59e-05 | - | yes |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 13/200 | 2.19 | 2.76e-03 | - | yes |
| M | 3 | GO:0000166 | nucleotide binding | 23/200 | 1.74 | 3.40e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 167/200 | 1.94 | 4.06e-33 | - | no |
| PS | 5 | PO:0009052 | pedicel | 160/200 | 1.97 | 6.96e-31 | - | no |
| PS | 4 | PO:0009047 | stem | 158/200 | 1.87 | 3.05e-27 | - | no |
| PS | 3 | PO:0009005 | root | 163/200 | 1.81 | 3.36e-27 | - | no |
| PS | 5 | PO:0008037 | seedling | 160/200 | 1.81 | 4.07e-26 | - | no |
| PS | 4 | PO:0009025 | leaf | 163/200 | 1.77 | 6.25e-26 | - | no |
| PS | 5 | PO:0020038 | petiole | 148/200 | 1.94 | 9.12e-26 | - | no |
| PS | 4 | PO:0009009 | embryo | 166/200 | 1.72 | 3.32e-25 | - | no |
| PS | 3 | PO:0009010 | seed | 166/200 | 1.70 | 1.82e-24 | - | no |
| PS | 4 | PO:0009001 | fruit | 166/200 | 1.69 | 3.71e-24 | - | no |
| PS | 3 | PO:0006342 | infructescence | 166/200 | 1.69 | 3.71e-24 | - | no |
| PS | 3 | PO:0009031 | sepal | 160/200 | 1.73 | 1.50e-23 | - | no |
| PS | 3 | PO:0009032 | petal | 155/200 | 1.77 | 4.67e-23 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 160/200 | 1.70 | 2.13e-22 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 160/200 | 1.70 | 2.13e-22 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 143/200 | 1.85 | 8.54e-22 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 147/200 | 1.78 | 4.14e-21 | - | no |
| PS | 3 | PO:0006001 | phyllome | 164/200 | 1.60 | 2.32e-20 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 147/200 | 1.75 | 2.86e-20 | - | no |
| PS | 5 | PO:0009046 | flower | 165/200 | 1.59 | 3.32e-20 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 165/200 | 1.58 | 7.25e-20 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 152/200 | 1.69 | 8.84e-20 | - | no |
| PS | 3 | PO:0009006 | shoot | 168/200 | 1.55 | 9.72e-20 | - | no |
| PS | 3 | PO:0009013 | meristem | 140/200 | 1.74 | 3.24e-18 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 137/200 | 1.76 | 4.89e-18 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 142/200 | 1.69 | 2.37e-17 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 128/200 | 1.74 | 1.26e-15 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 125/200 | 1.51 | 6.27e-10 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 61/200 | 1.88 | 1.49e-07 | - | no |
| PS | 3 | PO:0020097 | generative cell | 61/200 | 1.88 | 1.49e-07 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 163/200 | 2.05 | 1.23e-34 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 165/200 | 2.00 | 3.66e-34 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 165/200 | 1.99 | 1.09e-33 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 165/200 | 1.83 | 1.11e-28 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 165/200 | 1.82 | 2.03e-28 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 157/200 | 1.91 | 4.44e-28 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 168/200 | 1.65 | 1.72e-23 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 165/200 | 1.67 | 3.21e-23 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 168/200 | 1.60 | 7.64e-22 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 161/200 | 1.66 | 1.62e-21 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 142/200 | 1.85 | 2.17e-21 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 142/200 | 1.85 | 2.30e-21 | - | no |
| PG | 5 | PO:0007133 | leaf production | 147/200 | 1.75 | 4.07e-20 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 147/200 | 1.75 | 4.17e-20 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 147/200 | 1.74 | 8.92e-20 | - | no |
| KW | 0 | processing | - | 15/200 | 10.57 | 1.32e-12 | 3.82E-16 | yes |
| KW | 0 | complex | - | 28/200 | 3.31 | 7.54e-09 | - | no |
| KW | 0 | nucleotide | - | 23/200 | 3.61 | 2.81e-08 | - | no |
| KW | 0 | mitochondrion | - | 20/200 | 3.65 | 1.72e-07 | - | no |
| KW | 0 | mitochondrial | - | 12/200 | 5.32 | 5.14e-07 | - | no |
| KW | 0 | eukaryotic | - | 11/200 | 5.59 | 7.85e-07 | - | no |
| KW | 0 | cellular_component | - | 78/200 | 1.60 | 1.48e-06 | - | no |
| KW | 0 | motif | - | 16/200 | 3.29 | 8.86e-06 | - | no |
| KW | 0 | biological_process | - | 87/200 | 1.46 | 1.60e-05 | - | no |
| KW | 0 | ipr002885 | - | 11/200 | 3.92 | 2.84e-05 | - | no |
| KW | 0 | nucleic | - | 18/200 | 2.75 | 3.43e-05 | - | no |
| KW | 0 | pentatricopeptide | - | 11/200 | 3.79 | 4.01e-05 | - | no |
| KW | 0 | molecular_function | - | 75/200 | 1.49 | 4.45e-05 | - | no |
| KW | 0 | repeat | - | 26/200 | 2.00 | 2.50e-04 | - | no |
| KW | 0 | subunit | - | 17/200 | 2.32 | 4.39e-04 | 4.21E-16 | no |
| KW | 0 | translation | - | 13/200 | 2.62 | 5.01e-04 | - | no |
| KW | 0 | embryo | - | 15/200 | 2.16 | 1.76e-03 | - | no |
| KW | 0 | ubiquitin | - | 11/200 | 2.45 | 2.00e-03 | - | no |
| KW | 0 | intracellular | - | 12/200 | 2.33 | 2.19e-03 | - | no |
| KW | 0 | containing | - | 28/200 | 1.68 | 2.45e-03 | 4.00E-25 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
